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Releases: broadinstitute/cromshell

0.3.5

05 Jun 16:05
0.3.5
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New Feature: execution-status-count -p argument to pretty pretty print results.

e190f40 Tidy up code in cleanup function (#77)
e1fa14d Check that files exist and are non-empty before submitting(#76)
81b4a21 Fixed regression of relative job ID failure. (#74)
e65f1e2 Update README.md (#72)
f649e1a Pretty execution-status-count implementation (#67)

0.3.4

24 May 18:35
0.3.4
48c7755
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A small release with improvements to execution-status-count so it works with larger arrays of jobs. Also two bug fixes.

48c7755 Improve turtle shell pattern stability under moving conditions (#69)
47b5314 Increase performance of execution-status-count (#65)
79824e1 Fixed issue with list-outputs. (#64)

0.3.3

06 Mar 20:05
0.3.3
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Minor fixes:
416f9b5 printing subcommand to sdterr instead of stdout (#61)
69d18ba Added in protections to kill the turtleSpinner on exit. (#59)
ec2fafd red dead turtle (#57)

0.3.2

22 Feb 20:37
0.3.2
4230e2e
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A bug fix release. This fixes a bug that broke cromshell notify (#55) which was introduced in 0.3.0

4230e2e Fixed issue with notify daemon. (#56)

0.3.1

20 Feb 22:59
0.3.1
044d549
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Small release which adds a new global -t argument to configure the curl timeout.

044d549 Curl timeouts (#54)

0.3.0

13 Feb 19:31
0.3.0
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This version removes the default cromwell url and adds a setup process for first time users. Set up can be skipped by providing a ~/.cromshell/cromwell_server.config file or setting the CROMWELL_URL environment variable.

The previous default was: https://cromwell-v36.dsde-methods.broadinstitute.org

New features:

  • submit -w flag to wait until the job has started or failed with (appropriate waiting animation)
  • initial configuration so no default server is assumed
  • cleanup command to remove old runs

d615309 Added in -w flag for submit command. (#50)
bd2ac67 preventing error message when invoking cromshell with no args (#52)
17aed47 Added in basic first-time run config. (#47)
4123ab1 Update readme to reflect new behavior for workflow ids (#48)
ed41a26 Added a cleanup command to cromshell. (#46)
e8e1316 Refactored to use getopts in some places. (#45)

0.2.4

29 Jan 15:24
0.2.4
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Status turtle is more dramatic on failure.

2db1018 Dramatic dead turtle (#44)
c74e81c add note to readme about bioconda (#40)

0.2.3

17 Dec 16:12
0.2.3
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Changes:

  • moved the turtle to stderr instead of stdout
  • expand subworkflows when getting metadata

0.2.2

13 Dec 15:52
0.2.2
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Minor release, a bug fix and the addition of a turtle.
a084fe0 fix ping url (#34) - Thank you @huangzhibo
aa3e47d turtle status (#31)

0.2.1

10 Dec 20:25
0.2.1
cf0870f
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Bug fix release:

  • fixes a crash on systems which default to python3