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DEGA-106-Segmentation-Metrics #36

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DEGA-106-Segmentation-Metrics #36

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7d4e472
setting up boiler plate
cornhundred Oct 31, 2024
d9a7241
metrics addition + pre-process nb corrections
jaspreetishar Nov 15, 2024
9158935
remove comments
jaspreetishar Nov 15, 2024
03b913a
column name fix
jaspreetishar Nov 15, 2024
7e85a6c
clean up
jaspreetishar Nov 15, 2024
1d4459a
added extra metrics info as comments
jaspreetishar Nov 19, 2024
4e39919
included gene specific metrics
jaspreetishar Nov 20, 2024
95956a1
remove image intensity calc, clean up segmentation_qc.ipynb
jaspreetishar Nov 20, 2024
4e8f4ae
qc module name update
jaspreetishar Nov 20, 2024
172a1fa
xenium-default support, remove cells per um2 metric, concise metric n…
jaspreetishar Nov 22, 2024
9fd6060
output address fix, notebook changes
jaspreetishar Nov 26, 2024
f95d06b
working on custom segmentation
jaspreetishar Nov 26, 2024
de4ca6e
Merge branch 'main' into DEGA-106-Segmentation-Metrics
jaspreetishar Nov 26, 2024
cf5a68e
disjoint marker script addition in qc
jaspreetishar Dec 19, 2024
8eb29bf
segmentation_qc notebook clean up
jaspreetishar Dec 19, 2024
92bf616
more qc functions for default xenium results
jaspreetishar Jan 3, 2025
5bdd4bc
pulling changes from main to segmentation metrics branch
jaspreetishar Jan 3, 2025
2767e74
update branch with main
jaspreetishar Jan 15, 2025
57ec0bb
remove redundant functions
jaspreetishar Jan 16, 2025
af66df4
notebook check run
jaspreetishar Jan 16, 2025
c4f6b91
update with main
jaspreetishar Jan 16, 2025
82d95cc
remove algorithm specific, cell type specific lines
jaspreetishar Jan 17, 2025
3b65e0e
changes after review
jaspreetishar Jan 23, 2025
31a8709
notebook changes
jaspreetishar Jan 23, 2025
066a6ac
more review changes
jaspreetishar Jan 24, 2025
7803a8f
variable fix in nb
jaspreetishar Jan 27, 2025
8208e7f
more changes according to review
jaspreetishar Jan 27, 2025
f7f527d
latest review changes, input architecture fix, etc
jaspreetishar Jan 30, 2025
c50d799
adding comments for review
jaspreetishar Jan 30, 2025
1304456
merging changes from main
jaspreetishar Jan 30, 2025
0ba116b
function name change
jaspreetishar Jan 30, 2025
069f2b7
minor fixes
jaspreetishar Jan 31, 2025
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