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Update sdrf-pipelines 0.0.26 -> 0.0.27 #388

Merged
merged 5 commits into from
Jul 17, 2024
Merged

Update sdrf-pipelines 0.0.26 -> 0.0.27 #388

merged 5 commits into from
Jul 17, 2024

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ypriverol
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SDRF pipelines update 0.0.27

The following PR updates to 0.0.27. This new version allows the sdrf sample metadata validation to use not only ols for validation but also use local files to search terms from ontologies and validate the sdrf.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/quantms branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Jul 17, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit d4d0d1f

+| ✅ 292 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • nfcore_yml - nf-core version not set in .nf-core.yml

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-07-17 15:33:14

@ypriverol ypriverol linked an issue Jul 17, 2024 that may be closed by this pull request
ms ontology missing from OLS4 causes SAMPLESHEET_CHECK failure #385
Closed
@ypriverol ypriverol merged commit 94424c4 into bigbio:dev Jul 17, 2024
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@daichengxin daichengxin Awaiting requested review from daichengxin

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ms ontology missing from OLS4 causes SAMPLESHEET_CHECK failure
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