Only run rresolver in Bloom filter mode

bcgsc · Apr 3, 2021 · 25f5f66 · 25f5f66
1 parent 5c2a3b3
commit 25f5f66
Showing 1 changed file with 8 additions and 0 deletions.
diff --git a/bin/abyss-pe b/bin/abyss-pe
@@ -562,9 +562,17 @@ endif
 
 # Resolve repeats with short reads
 
+ifdef B
 %-1-rr.fa %-1-rr.$g: %-1.fa %-1.$g
 	$(gtime) abyss-rresolver-short $v -b$B -j$j -k$k $(RRESOLVER_OPTIONS) \
 	-h $*-1-rr --$g -c $*-1-rr.fa -g $*-1-rr.$g $^ $(in) $(se)
+else
+%-1-rr.fa: %-1.fa
+	ln -s $< $@
+
+%-1-rr.$g:  %-1.$g
+	ln -s $< $@
+endif
 
 # Remove shim contigs