Skip to content

Commit

Permalink
V1.1.0, ViennaRNA python wrapper (#7)
Browse files Browse the repository at this point in the history
* Refactor for functional programming, Introduced some cython

* Native package implementation of viennarna MFE

* Native subopt, fix standby precision issue

* Native subopt part 2

* RNAeval native implementation

* Circular input support

* Version=1.1.0, Remove cython, add constraints

* Updated documentation, fix reference

* Fix constraints, benchmarking script

* Some cleanup for release
  • Loading branch information
croots authored Nov 8, 2022
1 parent d1fd653 commit ddd7507
Show file tree
Hide file tree
Showing 12 changed files with 1,175 additions and 1,039 deletions.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -55,7 +55,7 @@ More options and examples are described in the [Wiki Documentation](https://gith
Run OSTIR on a sequence inside of a Python script:

```python3
from ostir.ostir import run_ostir
from ostir import run_ostir

seq = "ACUUCUAAUUUAUUCUAUUUAUUCGCGGAUAUGCAUAGGAGUGCUUCGAUGUCAU"
results = run_ostir(seq, name="my_sequence", threads=8)
Expand Down
Loading

0 comments on commit ddd7507

Please sign in to comment.