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@barricklab

Barrick Lab

Barrick Lab at the University of Texas at Austin

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  1. breseq breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a com…

    C++ 153 20

  2. LTEE-Ecoli LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    GAP 16 4

  3. ostir ostir Public

    Software for predicting translation initiation rates in bacteria

    Python 19 9

  4. pLannotate pLannotate Public

    Forked from mmcguffi/pLannotate

    Webserver and command line tool for annotating engineered plasmids

    Python 12 4

  5. brefito brefito Public

    Snakemake pipelines for assembling and annotating bacterial reference sequences

    Python 1

Repositories

Showing 10 of 46 repositories
  • seabreeze Public Forked from ira-zibbu/seabreeze-ltee-analysis

    Seabreeze: an automated pipeline for structrual variant analysis of bacterial resequencing experiments

    barricklab/seabreeze’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Dec 17, 2024
  • ostir Public

    Software for predicting translation initiation rates in bacteria

    barricklab/ostir’s past year of commit activity
    Python 19 GPL-3.0 9 3 (1 issue needs help) 0 Updated Nov 21, 2024
  • brefito Public

    Snakemake pipelines for assembling and annotating bacterial reference sequences

    barricklab/brefito’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Nov 19, 2024
  • breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.

    barricklab/breseq’s past year of commit activity
    C++ 153 GPL-2.0 20 37 1 Updated Oct 31, 2024
  • barricklab Public

    General data analysis spreadsheets and scripts

    barricklab/barricklab’s past year of commit activity
    Python 3 3 0 0 Updated Oct 23, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    barricklab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,326 0 0 Updated Oct 4, 2024
  • pLannotate Public Forked from mmcguffi/pLannotate

    Webserver and command line tool for annotating engineered plasmids

    barricklab/pLannotate’s past year of commit activity
    Python 12 GPL-3.0 21 0 0 Updated Sep 25, 2024
  • breseq-ext-cnv Public

    breseq copy number variation extension

    barricklab/breseq-ext-cnv’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Sep 17, 2024
  • LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    barricklab/LTEE-Ecoli’s past year of commit activity
    GAP 16 CC0-1.0 4 1 0 Updated Aug 14, 2024
  • cryptkeeper Public

    Tool for visualizing unintentional bacterial gene expression from a DNA sequence

    barricklab/cryptkeeper’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Aug 12, 2024
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