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anjibabuIITK/README.md

ANJI BABU KAPAKAYALA

  • 🔭 I’m a joint Ph.D. Scholar between IIT Kanpur, India and Curtin University, Australia.

  • 💬 Research Interest

     - Molecular Dynamics, 
     - Computational Biology Physics
     - CV discovery using neural networks or deep learning
     - Developement of enhanced sampling methods and Machine learning.
     - Software developement 
    
  • Status of Ph.D.

     Submitted the thesis and Joined as Senior Solutions Archetect 1 in Schrodinger.
    
  • 🌱 Programming Skills

    Fortran, Python, bash/shell, Makefile, Machine Learning, MPI Programming
    
  • 🌱 Developer Tools

    Git, GitHub, Docker-container, Linux Server administration
    
  • 🌱Packages Written (Favourite)

    I have written Keys and Rbin packages in Bash/shell
    

    Keys

    "Keys" is a password manager to help a user to store and organize passwords.
    Keys manages and stores the passwords encrypted and locally, requiring the 
    user to create a master password: a single, strong password  which  grants 
    the user access to their entire password database. Keys protects the user's
    data using the AES-256-cbc encryption with salted format.
    

    Rbin

    RBIN is a simple and user-friendly package to act as a recycle-bin for Linux. 
    rbin can be a safe alternative for a rm command. Rbin moves the given files to
    recycle bin and restores them to their original location. It has the flexibility
    of setup the auto cleanup feature for every 30days. Users can control over auto-clean
    setting to off or change the period of days to clean etc when required.
    

Publications:

  1. Boosting the Conformational Sampling by Combining Replica Exchange with Solute Tempering and Well-Sliced Metadynamics
  2. Free energy calculations of alanine tripeptide in explicit water using temperature accelerated sliced sampling

Stats :

Anji's GitHub stats

Top Langs


Languages and Tools:

Git Python Shell



Popular repositories Loading

  1. TCL_VMD_scripts TCL_VMD_scripts Public

    Some of useful tcl scripts to analyse data from VMD

    Tcl 14 7

  2. CLUSTER-ANALYSIS-USING-VMD-TCL CLUSTER-ANALYSIS-USING-VMD-TCL Public

    Kapakayala Anji Babu , IIT Kanpur, India.

    Tcl 6 2

  3. RECYCLEBIN_for_Linux RECYCLEBIN_for_Linux Public

    Recycle bin for Linux terminal written by Anji Babu Kapakayala.

    Shell 4

  4. Enhanced_Sampling_Methods_Tutorials Enhanced_Sampling_Methods_Tutorials Public

    Forked from NNairIITK/Enhanced_Sampling_Methods_Tutorials

    Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..

    Shell 3 1

  5. md-analysis-tools md-analysis-tools Public

    Forked from harmsm/md-analysis-tools

    scripts for analyzing molecular dynamics trajectories using VMD

    Python 2

  6. Histogram Histogram Public

    A FORTRAN90 code to Caluculate Histogram (Distribution ) for a given data

    Fortran 1