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@RangamaniLabUCSD

RangamaniLabUCSD

Laboratory for Computational Cellular Mechanobiology

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  1. Mem3DG Mem3DG Public

    3D computational model for lipid membranes

    C++ 19 11

  2. smart smart Public

    Spatial Modeling Algorithms for Reactions and Transport

    Python 7 3

  3. 2020-Mem3DG-Applications 2020-Mem3DG-Applications Public

    Jupyter Notebook 3 1

  4. CIUKF-MCMC CIUKF-MCMC Public

    Comprehensive uncertainty quantification framework for system biology

    Jupyter Notebook 3 2

  5. Lee-Laughlin-GAMer2 Lee-Laughlin-GAMer2 Public

    High resolution movies and supplemental files

    2 1

  6. gamer gamer Public

    Forked from ctlee/gamer

    Geometry-preserving Adaptive Mesher

    C++ 1

Repositories

Showing 10 of 52 repositories
  • Dynamic_multimerization Public

    This repository has all the source code, input files, analysis scripts, and sample data used to simulate dynamic dimerization of proteins within condensates.

    RangamaniLabUCSD/Dynamic_multimerization’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 13, 2024
  • smart Public

    Spatial Modeling Algorithms for Reactions and Transport

    RangamaniLabUCSD/smart’s past year of commit activity
    Python 7 LGPL-3.0 3 17 2 Updated Nov 6, 2024
  • Mem3DG Public

    3D computational model for lipid membranes

    RangamaniLabUCSD/Mem3DG’s past year of commit activity
    C++ 19 MPL-2.0 11 4 0 Updated Oct 30, 2024
  • smart-nanopillars Public Forked from RangamaniLabUCSD/smart-comp-sci

    Model of mechanotransduction for cells on nanopillars, using SMART.

    RangamaniLabUCSD/smart-nanopillars’s past year of commit activity
    Jupyter Notebook 0 CC-BY-SA-4.0 1 0 0 Updated Oct 29, 2024
  • ActuAtorForceEstimation Public

    Estimating forces on the membrane by ActuAtor

    RangamaniLabUCSD/ActuAtorForceEstimation’s past year of commit activity
    Jupyter Notebook 0 MPL-2.0 1 0 1 Updated Sep 20, 2024
  • Collagen_matrix_degradation Public Forked from BHANJANDEBNATH/Collagen_matrix_degradation

    collagen degradation by mmps; single fibril; matrix microarchitecture

    RangamaniLabUCSD/Collagen_matrix_degradation’s past year of commit activity
    MATLAB 0 1 0 0 Updated Aug 9, 2024
  • MechanoCircadian Public

    MATLAB-based implementation of the coupling between the cell Circadian clock and mechanotransduction.

    RangamaniLabUCSD/MechanoCircadian’s past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Jul 5, 2024
  • multimodel-inference Public

    Code for multimodel inference project

    RangamaniLabUCSD/multimodel-inference’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 17, 2024
  • 2022-mitochondria-lipidomics-md Public
    RangamaniLabUCSD/2022-mitochondria-lipidomics-md’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 12, 2024
  • smart-comp-sci Public

    Examples and numerical tests for SMART scientific computing paper.

    RangamaniLabUCSD/smart-comp-sci’s past year of commit activity
    Python 0 CC-BY-SA-4.0 1 0 0 Updated Jun 7, 2024
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