- To simulate degradation of single fibril
Run script in folder Single_fibril_model
- To simulate degradation of matrix
(a) run script 'Main_collagen.m' in folder Matrix_simulations
(b) save positions of enzymes and fibrils in *.mat file, and copy *.mat file to Post_process folder
(c) load *.mat file and run the script 'Matrix_degradation_postprocess_file1.m'