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add brief version of BABS project folder structure for paper figure
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Chenying Zhao committed Oct 5, 2023
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Expand Up @@ -533,6 +533,25 @@ the generated directives would be:
When running jobs, inputs are cloned from input RIA store,
and results and provenance will be pushed to output RIA store.

Below is a brief version (to be used in the paper):

.. code-block:: console
.
├── analysis
│   ├── CHANGELOG.md
│   ├── code # including scripts etc
│   ├── containers # cloned container DataLad dataset
│   ├── inputs # cloned input BIDS DataLad dataset(s)
│   ├── logs # where the log files will be
│   └── README.md
├── input_ria # input RIA
└── output_ria # output RIA
.. developer's note:
.. # Note for `logs` folder:
.. # `logs` folder probably exist from beginning (see above: full list of folder structure); log files will exist later.
.. # ├── merge_ds # for merging; it exists only after `babs-merge` is applied
Step 2.2. Use ``babs-check-setup`` to make sure it's good to go
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