Skip to content

Issues: PennLINC/babs

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

51 Open 65 Closed
51 Open 65 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[CI] Slurm e2e Failing bug Issues noting problems and PRs fixing those problems.
#180 opened Oct 14, 2024 by asmacdo
@tientong98
1
bab-init tries to datalad get a subject from input dataset that's NOT on subject list bug Issues noting problems and PRs fixing those problems.
#177 opened Sep 17, 2024 by audreycluo
2
babs requires all zips in original input dataset to be downloaded before doing babs-init enhancement New feature or request
#176 opened Sep 17, 2024 by audreycluo
Support SLURM array jobs in babs-submit enhancement New feature or request
#175 opened Jul 2, 2024 by tsalo
@tientong98
5
Allow babs-init to create the container dataset enhancement New feature or request
#174 opened Jul 2, 2024 by tsalo
Consolidate --where-project and --project-name in babs-init breaking-change PRs that change results or interfaces. enhancement New feature or request
#173 opened Jul 2, 2024 by tsalo
Convert --project-root parameter in CLIs to positional argument breaking-change PRs that change results or interfaces. enhancement New feature or request
#172 opened Jul 2, 2024 by tsalo
[ENH] Add workflow for processing and adding new subjects to BABS results enhancement New feature or request
#171 opened Mar 5, 2024 by mattcieslak
Make e2e testing run on PRs as well as e.g. weekly enhancement New feature or request
#170 opened Mar 5, 2024 by yarikoptic
Add user-configurable environment variable passthrough enhancement New feature or request
#167 opened Jan 8, 2024 by asmacdo
All templated bash scripts should be "robust" and shellcheck-clean bug Issues noting problems and PRs fixing those problems.
#166 opened Jan 4, 2024 by yarikoptic
[DOCS] update paper citation
#163 opened Dec 14, 2023 by zhao-cy
@mattcieslak
Make parsing of output more robust
#160 opened Dec 8, 2023 by yarikoptic
[FIX] git commit --amenderror when babs-init: need to add --allow-empty?
#156 opened Nov 15, 2023 by zhao-cy
1
2
[DOCS] docs enhancements from Austin documentation Improvements or additions to documentation
#154 opened Nov 3, 2023 by zhao-cy
2
[DOCS] update example walkthrough: to use $TMP" for CUBIC cluster
#153 opened Nov 1, 2023 by zhao-cy
Change permissions on NFS4 ACL filesystems in order to remove git annex files
#141 opened Sep 28, 2023 by Michael-Sun
1
FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. enhancement New feature or request
#140 opened Sep 27, 2023 by Michael-Sun
4
UnicodeEncodeError: 'latin-1' codec can't encode character '\u2713' in position 0: ordinal not in range(256) documentation Improvements or additions to documentation
#139 opened Sep 27, 2023 by Michael-Sun
@zhao-cy
1
[FIX] path generated by BABS is too long for freesurfer to function/run properly documentation Improvements or additions to documentation enhancement New feature or request
#138 opened Aug 24, 2023 by yibeichan
15
[DOCS] (NMIND gold) Continuous integration badges in README for coverage
#127 opened Jul 25, 2023 by zhao-cy
1
1
Test out: XCP-D when FreeSurfer derivatives are needed (i.e., –cifti and --warp-surfaces-native2std)
#123 opened Jul 24, 2023 by zhao-cy
installation error on Hanke group local cluster
#122 opened Jul 24, 2023 by zhao-cy
[DOCS] minor enhancements in docs after Sydney's review documentation Improvements or additions to documentation
#115 opened Jul 12, 2023 by zhao-cy
1 of 5 tasks
manuscript ready
[tests] infrastructure for automatic pytest of babs-submit and babs-status
#113 opened Jul 10, 2023 by zhao-cy Enhancements and features on the roadmap
ProTip! Find all open issues with in progress development work with linked:pr.