mzmltableview and configviewer

.gitignore

@@ -1,3 +1,5 @@
-.idea
-.pyc
-.DS_Store
+*.idea
+*.pyc
+*.DS_Store
+*.tmp
+**/__pycache__/

README.md

@@ -1,21 +1,24 @@
-pyOpenMS Extra
-=============
-
-pyOpenMS are the Python bindings to the OpenMS open-source C++ library for
-LC-MS data management and analyses. The Python bindings cover a large part of
-the OpenMS API to enable rapid algorithm development and workflow development.
-pyOpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data. 
-
-These utils contain documentation, installation instructions and example code
-that show the different functions of pyOpenMS.
-
-Installation
-=============
-
-Installation is best done through [PyPI](https://pypi.python.org/pypi/pyopenms)
-(the Python package index) where binary packages are provided for the release
-versions of OpenMS, covering Linux/Mac/Windows.
-
-Documentation
-=============
-The pyOpenMS documentation is also contained in this repository, see [docs/README.md](docs/README.md)
+# pyOpenMS Extra
+
+=============
+
+pyOpenMS are the Python bindings to the OpenMS open-source C++ library for
+LC-MS data management and analyses. The Python bindings cover a large part of
+the OpenMS API to enable rapid algorithm development and workflow development.
+pyOpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data.
+
+These utils contain documentation, installation instructions and example code
+that show the different functions of pyOpenMS.
+
+## Installation
+
+=============
+
+Installation is best done through [PyPI](https://pypi.python.org/pypi/pyopenms)
+(the Python package index) where binary packages are provided for the release
+versions of OpenMS, covering Linux/Mac/Windows.
+
+## Documentation
+
+=============
+The pyOpenMS documentation is also contained in this repository, see [documentation/README.md](docs/README.md)

src/apps/FLASHDeconvViewer.py

@@ -39,7 +39,8 @@
     QDialogButtonBox,
 )
 from matplotlib import cm
-from pyqtgraph import PlotWidget
+from pyqtgraph import PlotWidget  # noqa: E402
+
 
 sys.path.insert(0, "../view/")
 from SpecViewer import ScanBrowserWidget, App

src/apps/IDViewer.py

@@ -14,7 +14,7 @@
 )
 
 sys.path.insert(0, "../view")
-from ControllerWidget import ControllerWidget
+from ControllerWidget import ControllerWidget  # noqa: E402
 
 # structure for annotation (here for reference)
 PeakAnnoStruct = namedtuple(