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Adding plt.show() #446

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Adding plt.show() #446

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4 changes: 4 additions & 0 deletions docs/source/user_guide/centroiding.rst
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Expand Up @@ -34,6 +34,8 @@ Let's zoom in on an isotopic pattern in profile mode and plot it.
profile_spectra[0].get_peaks()[0], profile_spectra[0].get_peaks()[1]
) # plot the first spectrum

plt.show()

.. image:: img/profile_data.png

Because of the limited resolution of MS instruments m/z measurements are not of unlimited precision.
Expand All @@ -56,6 +58,8 @@ by storing only centroided data. Thus, many algorithms and tools assume that cen
centroided_spectra[0].get_peaks()[0], centroided_spectra[0].get_peaks()[1]
) # plot as vertical lines

plt.show()

.. image:: img/centroided_data.png

After centroiding, a single m/z value for every isotopic peak is retained. By plotting the centroided data as stem plot
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