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11 Open 22 Closed
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Issues list

Replace nanofilt with Chopper enhancement New feature or request
#43 opened Jul 10, 2023 by Thomieh73
@Thomieh73
5
Switch conda environments to using apptainer / singularity containers
#41 opened May 5, 2023 by Thomieh73
@Thomieh73
3
Create singularity container for Dorado
#40 opened May 5, 2023 by Thomieh73
@Thomieh73
2
Build workflow to process amplicon data enhancement New feature or request
#39 opened Mar 30, 2023 by Thomieh73
@Thomieh73
1
Reduce the output of intermediate files at the different pipeline steps enhancement New feature or request
#38 opened Mar 27, 2023 by Thomieh73
@Thomieh73
1
Add medaka for polishing the genome assembly enhancement New feature or request
#37 opened Dec 5, 2022 by Thomieh73
@Thomieh73
1
Add filter step to remove short reads below the median read length enhancement New feature or request
#36 opened Oct 21, 2022 by Thomieh73
@Thomieh73
Set-up modules for the different tools instead of having the inline scripts
#21 opened Apr 20, 2021 by Thomieh73
@Thomieh73
Add Kraken2 classification to the pipeline to identify contaminantion in nanopore datasets
#20 opened Apr 20, 2021 by Thomieh73
@Thomieh73
Add R-script to combine the output of the nanoplot on cleaned datasets enhancement New feature or request
#18 opened Dec 22, 2020 by Thomieh73
@Thomieh73
Add a tool to remove chimeric sequences
#11 opened Sep 30, 2020 by Thomieh73
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