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Add filter step to remove short reads below the median read length #36

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Thomieh73 opened this issue Oct 21, 2022 · 0 comments

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Thomieh73 commented Oct 21, 2022

The tool to use is filtlong.

reducing the number of short low quality reads improves assemblies by removing a lot of homopolymer errors.

With Fullforce we tested this and got better assemblies, and Camilla Nesbo also tested it on Oceanotoga genomes.

Thomieh73 self-assigned this

Thomieh73 added the enhancement label

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