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[pull] master from ehrbase:master #209
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Commits on Apr 22, 2024
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Merge pull request #1283 from ehrbase/feature/tweak-github-actions
Github actions - build final images as workflow_call
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Commits on Apr 23, 2024
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Merge pull request #1291 from ehrbase/feature/CDR-1403-fix-admin-quer…
…y-location Rename the AdminDefinitionController to AdminQueryController for consistency
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Merge pull request #1292 from ehrbase/feature/workflow-secret-access
Inherit secrets for github action workflow_call
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Commits on Apr 24, 2024
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Merge pull request #1293 from ehrbase/feature/CDR-1404
CDR-1404 Fix AslDvOrderedColumnField::copyWithOwner
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Merge pull request #1295 from ehrbase/feature/fix-action-names
Fix invalid github action naming
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Commits on Apr 26, 2024
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Merge pull request #1294 from ehrbase/feature/CDR-1329-adjust-csrf-on…
…-manegment-endpoints [CDR-1329] configure CSRF on management endpoints
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Commits on Apr 29, 2024
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Commits on May 2, 2024
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Merge pull request #1297 from ehrbase/feature/CDR-1329-change-managem…
…ent-csrf-property [CDR-1329] Move CSRF config to an ehrbase.security.* property
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Commits on May 3, 2024
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Commits on May 6, 2024
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Merge pull request #1305 from ehrbase/feature/fix-github-action-permi…
…ssions Add permissions for dorny/test-reporter and robot reporter
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Commits on May 7, 2024
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Merge pull request #1306 from ehrbase/feature/adjust-dorney-test-repo…
…rter-permissions Adjust permission for dorney test-reporter
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Merge pull request #1307 from ehrbase/feature/fix-robot-collect-repor…
…ter-permissions Change from GITHUB_TOKEN to PERSONAL_ACCESS_TOKEN
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release 2.1.0: updated version to 2.1.0
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Merge branch 'refs/heads/release/v2.1.0'
# Conflicts: # .github/workflows/maven-publish.yml
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Commits on May 8, 2024
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Merge pull request #1308 from ehrbase/feature/split-ci-and-junit-reports
Extract junit collection from build and test workflow
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Merge pull request #1309 from ehrbase/feature/fix-worflow-split
Fix invalid job dependency
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Merge pull request #1310 from ehrbase/feature/download-artifact-befor…
…-junit-collect Download JUnit artifact due to incompatibility of test-reporter with artifact@v4
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Merge pull request #1311 from ehrbase/feature/downalod-artifact-from-…
…wrokflow_run Download artifact from workflow_run
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Merge pull request #1312 from ehrbase/feature/git-checkout-for-unit-t…
…ests Perform git checkout for JUnit collect workflow
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Commits on May 13, 2024
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Merge pull request #1313 from ehrbase/feature/change-actions-secret
Change github token used for actions
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Bump org.jacoco:jacoco-maven-plugin from 0.8.11 to 0.8.12
Bumps [org.jacoco:jacoco-maven-plugin](https://github.com/jacoco/jacoco) from 0.8.11 to 0.8.12. - [Release notes](https://github.com/jacoco/jacoco/releases) - [Commits](jacoco/jacoco@v0.8.11...v0.8.12) --- updated-dependencies: - dependency-name: org.jacoco:jacoco-maven-plugin dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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Merge pull request #1298 from ehrbase/dependabot/maven/org.jacoco-jac…
…oco-maven-plugin-0.8.12 Bump org.jacoco:jacoco-maven-plugin from 0.8.11 to 0.8.12
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Bump com.sun.xml.bind:jaxb-impl from 2.3.6 to 2.3.9
Bumps com.sun.xml.bind:jaxb-impl from 2.3.6 to 2.3.9. --- updated-dependencies: - dependency-name: com.sun.xml.bind:jaxb-impl dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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Merge pull request #1299 from ehrbase/dependabot/maven/com.sun.xml.bi…
…nd-jaxb-impl-2.3.9 Bump com.sun.xml.bind:jaxb-impl from 2.3.6 to 2.3.9
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Bump commons-io:commons-io from 2.15.1 to 2.16.1
Bumps commons-io:commons-io from 2.15.1 to 2.16.1. --- updated-dependencies: - dependency-name: commons-io:commons-io dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]>
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Merge pull request #1289 from ehrbase/dependabot/maven/commons-io-com…
…mons-io-2.16.1 Bump commons-io:commons-io from 2.15.1 to 2.16.1
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Bump io.micrometer:micrometer-registry-prometheus from 1.12.5 to 1.12.6
Bumps [io.micrometer:micrometer-registry-prometheus](https://github.com/micrometer-metrics/micrometer) from 1.12.5 to 1.12.6. - [Release notes](https://github.com/micrometer-metrics/micrometer/releases) - [Commits](micrometer-metrics/micrometer@v1.12.5...v1.12.6) --- updated-dependencies: - dependency-name: io.micrometer:micrometer-registry-prometheus dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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Commits on May 15, 2024
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Merge pull request #1315 from ehrbase/dependabot/maven/io.micrometer-…
…micrometer-registry-prometheus-1.12.6 Bump io.micrometer:micrometer-registry-prometheus from 1.12.5 to 1.12.6
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Bump com.fasterxml.jackson:jackson-bom from 2.17.0 to 2.17.1
Bumps [com.fasterxml.jackson:jackson-bom](https://github.com/FasterXML/jackson-bom) from 2.17.0 to 2.17.1. - [Commits](FasterXML/jackson-bom@jackson-bom-2.17.0...jackson-bom-2.17.1) --- updated-dependencies: - dependency-name: com.fasterxml.jackson:jackson-bom dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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Merge pull request #1316 from ehrbase/dependabot/maven/com.fasterxml.…
…jackson-jackson-bom-2.17.1 Bump com.fasterxml.jackson:jackson-bom from 2.17.0 to 2.17.1
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Bump org.springdoc:springdoc-openapi-starter-webmvc-ui
Bumps [org.springdoc:springdoc-openapi-starter-webmvc-ui](https://github.com/springdoc/springdoc-openapi) from 2.3.0 to 2.5.0. - [Release notes](https://github.com/springdoc/springdoc-openapi/releases) - [Changelog](https://github.com/springdoc/springdoc-openapi/blob/main/CHANGELOG.md) - [Commits](springdoc/springdoc-openapi@v2.3.0...v2.5.0) --- updated-dependencies: - dependency-name: org.springdoc:springdoc-openapi-starter-webmvc-ui dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]>
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Merge pull request #1290 from ehrbase/dependabot/maven/org.springdoc-…
…springdoc-openapi-starter-webmvc-ui-2.5.0 Bump org.springdoc:springdoc-openapi-starter-webmvc-ui from 2.3.0 to 2.5.0
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Bump jooq.version from 3.19.7 to 3.19.8
Bumps `jooq.version` from 3.19.7 to 3.19.8. Updates `org.jooq:jooq` from 3.19.7 to 3.19.8 Updates `org.jooq:jooq-codegen-maven` from 3.19.7 to 3.19.8 --- updated-dependencies: - dependency-name: org.jooq:jooq dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: org.jooq:jooq-codegen-maven dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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Commits on May 16, 2024
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Merge pull request #1314 from ehrbase/dependabot/maven/jooq.version-3…
….19.8 Bump jooq.version from 3.19.7 to 3.19.8
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Commits on May 17, 2024
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[CDR-1397] Add AQL/SQL debug option (#1296)
- set meta.schemaVersion to 1.0.3 - introduced request-scoped AqlQueryContext - introduced config setting ehrbase.rest.aql.response.executed-aql-enabled --------- Co-authored-by: Holger Reise <[email protected]> Co-authored-by: vinzenz.mueller <[email protected]>
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Commits on May 21, 2024
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Merge pull request #1324 from ehrbase/feature/CDR-1430_aql-headers
CDR-1430 change debugging header names
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Commits on May 24, 2024
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Merge pull request #1302 from ehrbase/feature/project-cleanup
Feature/project cleanup
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Commits on May 27, 2024
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Merge pull request #1326 from ehrbase/feature/CDR-1438-fix-postgres-e…
…xplain-analyze CDR-1438 Fix postgres explain analyze
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Merge pull request #1325 from ehrbase/feature/CDR-1391-AQL-query-vali…
…date-offset-fetch CDR-1391 Reject invalid fetch/offset with HTTP 422
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release 2.2.0: updated version to 2.2.0
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updated version to 2.3.0-SNAPSHOT
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Merge branch 'release/v2.2.0' into develop
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Commits on May 28, 2024
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Commits on May 29, 2024
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Merge pull request #1328 from ehrbase/feature/add-sonar-workflow_run-…
…action Add sonar report workflow_run
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Merge pull request #1330 from ehrbase/feature/use-sonar-analyze-workf…
…low_run Use extracted sonar workflow_run
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Bump org.pf4j:pf4j from 3.11.0 to 3.11.1
Bumps [org.pf4j:pf4j](https://github.com/pf4j/pf4j) from 3.11.0 to 3.11.1. - [Release notes](https://github.com/pf4j/pf4j/releases) - [Changelog](https://github.com/pf4j/pf4j/blob/master/CHANGELOG.md) - [Commits](pf4j/pf4j@release-3.11.0...release-3.11.1) --- updated-dependencies: - dependency-name: org.pf4j:pf4j dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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Merge pull request #1319 from ehrbase/dependabot/maven/org.pf4j-pf4j-…
…3.11.1 Bump org.pf4j:pf4j from 3.11.0 to 3.11.1
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Commits on Jun 4, 2024
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CDR-1456 Performance improvement for structure subqueries targeting n…
…on locatable rm types
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Commits on Jun 5, 2024
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Merge pull request #1341 from ehrbase/feature/CDR-1456
CDR-1456 Performance improvement for structure subqueries targeting n…
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release 2.3.0: updated version to 2.3.0
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updated version to 2.4.0-SNAPSHOT
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Merge branch 'release/v2.3.0' into develop
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CDR-1401 Add Robot tests with Basic and OAUTH2 auth types (#1342)
* feat: CDR-1401 change SECURITY_AUTHTYPE to use an env var to ehrbase container * feat: CDR-1401 add env var with AUTH_TYPE value * fix: CDR-1401 send properly the env vars to docker compose * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline with default value NONE on SECURITY_AUTH_TYPE * fix: CDR-1401 test pipeline - send AUTH type * fix: CDR-1401 set SECURITY_AUTHTYPE: NONE to ehrbase docker compose service * fix: CDR-1401 test with AUTH_TYPE=OAUTH * fix: CDR-1401 test with AUTH_TYPE=BASIC * fix: CDR-1401 add SECURITY_AUTHTYPE: 'NONE' * fix: CDR-1401 set AUTH_TYPE to be accesible in docker-compose-int-test.yml * fix: CDR-1401 set AUTH_TYPE to be accesible in docker-compose-int-test.yml through * fix: CDR-1401 add AUTH_TYPE to env var * fix: CDR-1401 adjust docker-compose-int-test to accept var * fix: CDR-1401 adjust docker-compose-int-test to accept var modified * fix: CDR-1401 test pipeline with BASIC SECURITY_AUTHTYPE for ehrbase docker service * fix: CDR-1401 use export to send AUTH_TYPE value * fix: CDR-1401 set AUTH_TYPE to auth.env file to be used in docker compose * fix: CDR-1401 set AUTH_TYPE to auth.env file to be used in docker compose * fix: CDR-1401 set AUTH_TYPE to auth.env file to be used in docker compose * fix: CDR-1401 remove SECURITY_AUTHTYPE var from docker-compose-int-test.yml file - ehrbase service * fix: CDR-1401 test pipeline with SECURITY_AUTHTYPE=NONE set in .env.ehrbase * fix: CDR-1401 set SECURITY_AUTHTYPE based on value from matrix.test-suite * fix: CDR-1401 test pipeline with different auth types * feat: CDR-1401 enable AUTH_TYPE_TESTS BASIC cases * feat: CDR-1401 set value to SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI if AUTH_TYPE is OAUTH * fix: CDR-1401 adjust how Keycloak is started and import realm, wait for keycloak to be ready * fix: CDR-1401 get logs from Keycloak * fix: CDR-1401 check OAUTH tests * fix: CDR-1401 retry keycloak to have cdr-core-sanity-check realm * fix: CDR-1401 increase sleep for keycloak for debug * fix: CDR-1401 fix retries for keycloak to check for realm existence * fix: CDR-1401 fix if ending on retries for keycloak to check for realm existence * fix: CDR-1401 test pipeline with keycloak/import inside workflows folder * fix: CDR-1401 test retry for keycloak * fix: CDR-1401 test retry for keycloak * fix: CDR-1401 use pwd to provide full path for realm to be imported * fix: CDR-1401 use . to provide relative path for realm to be imported * fix: CDR-1401 display files and folders, check rights * fix: CDR-1401 move folder with keycloak import to tests folder * fix: CDR-1401 move folder with keycloak import to tests folder * fix: CDR-1401 cleanup docker-compose and build_and_test * fix: CDR-1401 add KEYCLOAK_URL * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test with port 8081 in SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI * fix: CDR-1401 change jwt issuer-uri to localhost * fix: CDR-1401 change jwt issuer-uri to keycloak:8081 * fix: CDR-1401 change SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI and set env-file to docker compose command * fix: CDR-1401 change SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI and unset env-file to docker compose command * fix: CDR-1401 remove jwt-issuer and security_authtype as they will be automatically appended during pipeline execution * fix: CDR-1401 enable BASIC AUTH tests * fix: CDR-1401 change KEYCLOAK_BASE_URL to http://keycloak:8081 * fix: CDR-1401 add keycloak docker service * fix: CDR-1401 remove links but use networks * fix: CDR-1401 add networks to the bottom * fix: CDR-1401 restore links * fix: CDR-1401 add keycloak to links from ehrbase * fix: CDR-1401 remove keycloak mention from docker-compose-int-test.yml * fix: CDR-1401 add keycloak to docker-compose-int-test.yml * fix: CDR-1401 add keycloak to docker-compose-int-test.yml links ehrbase service * fix: CDR-1401 remove links keycloak from ehrbase service * fix: CDR-1401 remove keycloak mentions * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: add ports to keycloak service * fix: change jwt-issueruri to localhost * fix: change pipeline for testing * fix: change pipeline for testing * fix: change KEYCLOAK_BASE_URL and host in SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI * fix: CDR-1401 test pipeline * fix: change port for KEYCLOAK_BASE_URL * fix: remove useless env vars for keycloak service * fix: test pipeline with keycloak:8080/auth... jwt.issuer-uri and adjust docker-compose.yml file * fix: CDR-1401 remove debug logs and enable all test suites * fix: CDR-1401 add AUTH_TYPE=BASIC for other tests than AUTH_TYPE ones * fix: CDR-1401 remove AUTH_TYPE from SANITY_TESTS * fix: CDR-1401 set AUTH_TYPE in .env.ehrbase when AUTH_TYPE=BASIC * fix: CDR-1401 add AUTH_TYPE in .env.ehrbase if it is set to BASIC or OAUTH * fix: CDR-1401 add AUTH_TYPE in .env.ehrbase in both BASIC and OAUTH types * fix: CDR-1401 enable all test suites * fix: CDR-1401 prepare for PR * fix: CDR-1401 get integration-tests using tag latest - ready for PR * fix: CDR-1401 enable back integration-tests tag latest-feature to make Robot tests passing in feature branch * fix: CDR-1401 rename Keycloak realm and client_id, provide new exported keycloak realm+users * fix: remove not used users and roles * fix: CDR-1401 restore latest tag for integration-tests
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CDR-1330 AQL meta parameters default-limit, max-limit, max-fetch + fe…
…tch precedence strategies
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Merge pull request #1345 from ehrbase/feature/CDR-1479
Feature/cdr 1479
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release 2.4.0: updated version to 2.4.0
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updated version to 2.5.0-SNAPSHOT
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Merge branch 'release/v2.4.0' into develop
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Merge pull request #1333 from ehrbase/feature/CDR-1429-fix-broken-swa…
…gger-ui CDR-1429 Remove @Header schema that fails in spring doc 2.5.0
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[CDR-1453] Deprecate plugin functions
* Dependency inversion * Fixed typo * Changed * Deprecated plugin aspects * spotless * spotless * spotless --------- Co-authored-by: MBA <[email protected]>
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CDR-1487 Add workflow_run for robot PR reports (#1347)
* CDR-1487 Add workflow_run for robot PR reports * CDR-1487 Correct access token used for download
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CDR-1487 Use workflow_run for robot PR reports (#1348)
* CDR-1487 Use workflow_run for robot PR reports * CDR-1487 Update workflow_run for robot PR reports
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Commits on Jun 17, 2024
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Create dedicated ehrbase use to run the container (#1336)
* Create dedicated ehrbase non-root user * Use root user in EHRbase Test image to prevent permission issues * Delete obsolete version attributes
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Bump net.bull.javamelody:javamelody-spring-boot-starter (#1340)
Bumps [net.bull.javamelody:javamelody-spring-boot-starter](https://github.com/javamelody/javamelody) from 1.98.0 to 1.99.0. - [Release notes](https://github.com/javamelody/javamelody/releases) - [Changelog](https://github.com/javamelody/javamelody/blob/master/javamelody-release.cmd) - [Commits](javamelody/javamelody@javamelody-core-1.98.0...javamelody-core-1.99.0) --- updated-dependencies: - dependency-name: net.bull.javamelody:javamelody-spring-boot-starter dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump jooq.version from 3.19.8 to 3.19.10 (#1351)
Bumps `jooq.version` from 3.19.8 to 3.19.10. Updates `org.jooq:jooq` from 3.19.8 to 3.19.10 Updates `org.jooq:jooq-codegen-maven` from 3.19.8 to 3.19.10 --- updated-dependencies: - dependency-name: org.jooq:jooq dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: org.jooq:jooq-codegen-maven dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump org.pf4j:pf4j-spring from 0.8.0 to 0.9.0 (#1320)
Bumps [org.pf4j:pf4j-spring](https://github.com/pf4j/pf4j-spring) from 0.8.0 to 0.9.0. - [Release notes](https://github.com/pf4j/pf4j-spring/releases) - [Changelog](https://github.com/pf4j/pf4j-spring/blob/master/CHANGELOG.md) - [Commits](pf4j/pf4j-spring@release-0.8.0...release-0.9.0) --- updated-dependencies: - dependency-name: org.pf4j:pf4j-spring dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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[CDR-1471] Align template controller with latest spec (#1334)
* Align template controller with latest spec * Add suggestion from Code review
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Bump org.apache.maven.plugins:maven-failsafe-plugin from 3.2.5 to 3.3…
….0 (#1354) Bumps [org.apache.maven.plugins:maven-failsafe-plugin](https://github.com/apache/maven-surefire) from 3.2.5 to 3.3.0. - [Release notes](https://github.com/apache/maven-surefire/releases) - [Commits](apache/maven-surefire@surefire-3.2.5...surefire-3.3.0) --- updated-dependencies: - dependency-name: org.apache.maven.plugins:maven-failsafe-plugin dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump org.apache.maven.plugins:maven-dependency-plugin (#1356)
Bumps [org.apache.maven.plugins:maven-dependency-plugin](https://github.com/apache/maven-dependency-plugin) from 3.6.1 to 3.7.1. - [Release notes](https://github.com/apache/maven-dependency-plugin/releases) - [Commits](apache/maven-dependency-plugin@maven-dependency-plugin-3.6.1...maven-dependency-plugin-3.7.1) --- updated-dependencies: - dependency-name: org.apache.maven.plugins:maven-dependency-plugin dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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CDR-909 Make release pipeline independent from SDK release (#1360)
- Ensure the SDK is not checked out and build during release - Add new profile that checks for -SNAPSHOT deps - Run -SNAPSHOT check before starting the release build
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Bump docker/build-push-action from 5 to 6 (#1357)
* Bump docker/build-push-action from 5 to 6 Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](docker/build-push-action@v5...v6) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Disable docker/build-push-action@6 summary for jacoco cli image --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: alexlehn <[email protected]>
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Bump io.micrometer:micrometer-registry-prometheus from 1.12.6 to 1.13…
….1 (#1350) Bumps [io.micrometer:micrometer-registry-prometheus](https://github.com/micrometer-metrics/micrometer) from 1.12.6 to 1.13.1. - [Release notes](https://github.com/micrometer-metrics/micrometer/releases) - [Commits](micrometer-metrics/micrometer@v1.12.6...v1.13.1) --- updated-dependencies: - dependency-name: io.micrometer:micrometer-registry-prometheus dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump org.codehaus.mojo:versions-maven-plugin from 2.16.2 to 2.17.0 (#…
…1367) Bumps [org.codehaus.mojo:versions-maven-plugin](https://github.com/mojohaus/versions) from 2.16.2 to 2.17.0. - [Release notes](https://github.com/mojohaus/versions/releases) - [Changelog](https://github.com/mojohaus/versions/blob/master/ReleaseNotes.md) - [Commits](mojohaus/versions@2.16.2...2.17.0) --- updated-dependencies: - dependency-name: org.codehaus.mojo:versions-maven-plugin dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump org.sonatype.plugins:nexus-staging-maven-plugin (#1365)
Bumps org.sonatype.plugins:nexus-staging-maven-plugin from 1.6.13 to 1.7.0. --- updated-dependencies: - dependency-name: org.sonatype.plugins:nexus-staging-maven-plugin dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump org.springdoc:springdoc-openapi-starter-webmvc-ui (#1366)
Bumps [org.springdoc:springdoc-openapi-starter-webmvc-ui](https://github.com/springdoc/springdoc-openapi) from 2.5.0 to 2.6.0. - [Release notes](https://github.com/springdoc/springdoc-openapi/releases) - [Changelog](https://github.com/springdoc/springdoc-openapi/blob/main/CHANGELOG.md) - [Commits](springdoc/springdoc-openapi@v2.5.0...v2.6.0) --- updated-dependencies: - dependency-name: org.springdoc:springdoc-openapi-starter-webmvc-ui dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump org.apache.maven.plugins:maven-enforcer-plugin from 3.4.1 to 3.5…
….0 (#1370) Bumps [org.apache.maven.plugins:maven-enforcer-plugin](https://github.com/apache/maven-enforcer) from 3.4.1 to 3.5.0. - [Release notes](https://github.com/apache/maven-enforcer/releases) - [Commits](apache/maven-enforcer@enforcer-3.4.1...enforcer-3.5.0) --- updated-dependencies: - dependency-name: org.apache.maven.plugins:maven-enforcer-plugin dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump com.fasterxml.jackson:jackson-bom from 2.17.1 to 2.17.2 (#1369)
Bumps [com.fasterxml.jackson:jackson-bom](https://github.com/FasterXML/jackson-bom) from 2.17.1 to 2.17.2. - [Commits](FasterXML/jackson-bom@jackson-bom-2.17.1...jackson-bom-2.17.2) --- updated-dependencies: - dependency-name: com.fasterxml.jackson:jackson-bom dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Commits on Jul 11, 2024
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[CDR-1460] Align EHR controller with 1.0.3 spec (#1371)
* Align EHR controller with 1.0.3 spec * Fix sonar issues * Use latest integration tests
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Merge pull request #1358 from ehrbase/feature/CDR-1456-omit-target-types
Feature/cdr 1456 omit target types
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Only apply the createRestContext to methods which were not covered an…
…d remove it from generic responseBuilder
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release 2.5.0: updated version to 2.5.0
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Merge branch 'release/v2.5.0' into develop
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Merge pull request #1359 from ehrbase/feature/CDR-1456_parentNum
Feature/cdr 1456 parent num
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release 2.6.0: updated version to 2.6.0
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Merge branch 'release/v2.6.0' into develop
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fix: CDR-1451 enable Robot tests with tags located in integration-tes…
…ts:latest-feature
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fix: CDR-1451 enable Robot tests with tags located in integration-tes…
…ts:latest-feature
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[CDR-1506] validate ehrstatus flags (#1377)
* CDR-1506 Adjust EHR_STATUS validation * CDR-1506 Provide EHR ID and Status for creation * feat: CDR-1506 take Robot tests based on docker image latest-feature_CDR-1506_adjust_tests_ehr * CDR-1506 Consistent return type for EHRService --------- Co-authored-by: vladislavploaia <[email protected]>
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[CDR-1466] Fix AQL on Media file cluster with inline data (#1380)
* Use single jsonb select for byte values * Prevent Base64 encoding of byte[] in structure serialization * Cleanup and test BYTE single value handling * Ensure byte[] base64 is handled properly in Db/Rm json * Adopt OpenEHR_SDK base64 changed * Use latest 2.17.0 OpenEHR SDK --------- Co-authored-by: vladislavploaia <[email protected]>
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Merge pull request #1385 from ehrbase/feature/CDR-1530-fix-ehrscrape-…
…comp-not-exist-500 CDR-1530 Fix ehrscape comp get by return proper 404
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Merge pull request #1343 from ehrbase/feature/CDR-1451-basic-tag-support
[CDR-1451] Basic ItemTag support
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CDR-1532 Add EHRbase CLI to support pre migrations (#1387)
* CDR-1532 Add EHRbase CLI to support pre migrations * CDR-1532 Add unit test for CLI package * CDR-1532 Add CI test for EHRbase CLI * CDR-1532 Add suggestion from code review * CDR-1532 Update changelog
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CDR-1325 Enable Performance tests to Build and Test pipeline (#1390)
* feat: CDR-1325 add docker service to start docker container with perf tests * CDR-1325 disable Robot tests and enable logs for perf-tests * fix: add separate pipeline yml definition for Perf docker services * fix: CDR-1325 adjust starting docker compose * fix: CDR-1325 wait for WebTester to be ready * fix: CDR-1325 wait for WebTester to be ready - pipeline update * fix: CDR-1325 provide port to webtester in docker file * fix: CDR-1325 wait for webtester to be up * fix: CDR-1325 use correct docker compose command * fix: CDR-1325 get docker compose file from tests folder * fix: CDR-1325 get docker compose file from tests folder * fix: CDR-1325 wait for webtester to be up * fix: CDR-1325 get all perf test plans * fix: CDR-1325 get all perf test plans * fix: CDR-1325 start perf test plan * CDR-1325 add perf test plans and use Github action to run perf tests * CDR-1325 change host to run perf tests * CDR-1325 change where report is stored * CDR-1325 change where report is stored * CDR-1325 change where report is stored * CDR-1325 change from where result.jtl should be taken to be uploaded * CDR-1325 use different image to run perf tests * fix: add command to docker service * fix: add command to docker service * fix: test pipeline * fix: test pipeline * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter * fix: test pipeline with jmeter - check status of EHRBase * fix: test pipeline with jmeter - check status of EHRBase * fix: test pipeline with jmeter - check status of EHRBase * fix: test pipeline with jmeter - check status of EHRBase * fix: test pipeline with jmeter - check status of EHRBase * fix: test pipeline with jmeter - check status of EHRBase * fix: test pipeline with jmeter - check status of EHRBase * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * fix: use docker service to start jmeter * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * CDR-1325 matrix configuration enabled for different auth types * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 rotate jmeter results to have stored 3 latest ones * fix: CDR-1325 organize JMeter results and reports in folders and upload them to run * fix: CDR-1325 organize JMeter results and reports in folders and upload them to run * fix: remove useless docker compose file * Update build_and_test.yml * Update docker-compose-perf-test.yml * Update build_and_test.yml Update threads group configuration. Set default to: THREADS: 10 RAMP_UP: 1 LOOP_COUNT: 50 DURATION: 360 * Update build_and_test.yml Update threads duration to 180s * fix: CDR-1325 use ehrbase/ehrbase:build for performance tests * fix: CDR-1325 use ehrbase/ehrbase:build for performance tests and wait for jmeter service to be running * fix: CDR-1325 remove performance-test-run from needs array in docker-build-push
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CDR-1532 Update Postgres v15 migration (#1389)
* CDR-1532 Update Postgres v15 migration * CDR-1532 Remove temporary indicis for Postgres v15 migration * CDR-1532 Remove pre-flight capability for v15 migration * CDR-1532 Re-Add temporary migration indicies for v15 migration * CDR-1532 Add suggestion from code review for migration v15 * CDR-1532 Add old flyway checksum
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release 2.7.0: updated version to 2.7.0
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