[pull] master from ehrbase:master #209
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…date-offset-fetch CDR-1391 Reject invalid fetch/offset with HTTP 422
…action Add sonar report workflow_run
…low_run Use extracted sonar workflow_run
Bumps [org.pf4j:pf4j](https://github.com/pf4j/pf4j) from 3.11.0 to 3.11.1. - [Release notes](https://github.com/pf4j/pf4j/releases) - [Changelog](https://github.com/pf4j/pf4j/blob/master/CHANGELOG.md) - [Commits](pf4j/pf4j@release-3.11.0...release-3.11.1) --- updated-dependencies: - dependency-name: org.pf4j:pf4j dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
…3.11.1 Bump org.pf4j:pf4j from 3.11.0 to 3.11.1
…on locatable rm types
CDR-1456 Performance improvement for structure subqueries targeting n…
* feat: CDR-1401 change SECURITY_AUTHTYPE to use an env var to ehrbase container * feat: CDR-1401 add env var with AUTH_TYPE value * fix: CDR-1401 send properly the env vars to docker compose * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline with default value NONE on SECURITY_AUTH_TYPE * fix: CDR-1401 test pipeline - send AUTH type * fix: CDR-1401 set SECURITY_AUTHTYPE: NONE to ehrbase docker compose service * fix: CDR-1401 test with AUTH_TYPE=OAUTH * fix: CDR-1401 test with AUTH_TYPE=BASIC * fix: CDR-1401 add SECURITY_AUTHTYPE: 'NONE' * fix: CDR-1401 set AUTH_TYPE to be accesible in docker-compose-int-test.yml * fix: CDR-1401 set AUTH_TYPE to be accesible in docker-compose-int-test.yml through * fix: CDR-1401 add AUTH_TYPE to env var * fix: CDR-1401 adjust docker-compose-int-test to accept var * fix: CDR-1401 adjust docker-compose-int-test to accept var modified * fix: CDR-1401 test pipeline with BASIC SECURITY_AUTHTYPE for ehrbase docker service * fix: CDR-1401 use export to send AUTH_TYPE value * fix: CDR-1401 set AUTH_TYPE to auth.env file to be used in docker compose * fix: CDR-1401 set AUTH_TYPE to auth.env file to be used in docker compose * fix: CDR-1401 set AUTH_TYPE to auth.env file to be used in docker compose * fix: CDR-1401 remove SECURITY_AUTHTYPE var from docker-compose-int-test.yml file - ehrbase service * fix: CDR-1401 test pipeline with SECURITY_AUTHTYPE=NONE set in .env.ehrbase * fix: CDR-1401 set SECURITY_AUTHTYPE based on value from matrix.test-suite * fix: CDR-1401 test pipeline with different auth types * feat: CDR-1401 enable AUTH_TYPE_TESTS BASIC cases * feat: CDR-1401 set value to SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI if AUTH_TYPE is OAUTH * fix: CDR-1401 adjust how Keycloak is started and import realm, wait for keycloak to be ready * fix: CDR-1401 get logs from Keycloak * fix: CDR-1401 check OAUTH tests * fix: CDR-1401 retry keycloak to have cdr-core-sanity-check realm * fix: CDR-1401 increase sleep for keycloak for debug * fix: CDR-1401 fix retries for keycloak to check for realm existence * fix: CDR-1401 fix if ending on retries for keycloak to check for realm existence * fix: CDR-1401 test pipeline with keycloak/import inside workflows folder * fix: CDR-1401 test retry for keycloak * fix: CDR-1401 test retry for keycloak * fix: CDR-1401 use pwd to provide full path for realm to be imported * fix: CDR-1401 use . to provide relative path for realm to be imported * fix: CDR-1401 display files and folders, check rights * fix: CDR-1401 move folder with keycloak import to tests folder * fix: CDR-1401 move folder with keycloak import to tests folder * fix: CDR-1401 cleanup docker-compose and build_and_test * fix: CDR-1401 add KEYCLOAK_URL * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test pipeline * fix: CDR-1401 test with port 8081 in SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI * fix: CDR-1401 change jwt issuer-uri to localhost * fix: CDR-1401 change jwt issuer-uri to keycloak:8081 * fix: CDR-1401 change SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI and set env-file to docker compose command * fix: CDR-1401 change SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI and unset env-file to docker compose command * fix: CDR-1401 remove jwt-issuer and security_authtype as they will be automatically appended during pipeline execution * fix: CDR-1401 enable BASIC AUTH tests * fix: CDR-1401 change KEYCLOAK_BASE_URL to http://keycloak:8081 * fix: CDR-1401 add keycloak docker service * fix: CDR-1401 remove links but use networks * fix: CDR-1401 add networks to the bottom * fix: CDR-1401 restore links * fix: CDR-1401 add keycloak to links from ehrbase * fix: CDR-1401 remove keycloak mention from docker-compose-int-test.yml * fix: CDR-1401 add keycloak to docker-compose-int-test.yml * fix: CDR-1401 add keycloak to docker-compose-int-test.yml links ehrbase service * fix: CDR-1401 remove links keycloak from ehrbase service * fix: CDR-1401 remove keycloak mentions * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: CDR-1401 fix docker compose file * fix: add ports to keycloak service * fix: change jwt-issueruri to localhost * fix: change pipeline for testing * fix: change pipeline for testing * fix: change KEYCLOAK_BASE_URL and host in SPRING_SECURITY_OAUTH2_RESOURCESERVER_JWT_ISSUERURI * fix: CDR-1401 test pipeline * fix: change port for KEYCLOAK_BASE_URL * fix: remove useless env vars for keycloak service * fix: test pipeline with keycloak:8080/auth... jwt.issuer-uri and adjust docker-compose.yml file * fix: CDR-1401 remove debug logs and enable all test suites * fix: CDR-1401 add AUTH_TYPE=BASIC for other tests than AUTH_TYPE ones * fix: CDR-1401 remove AUTH_TYPE from SANITY_TESTS * fix: CDR-1401 set AUTH_TYPE in .env.ehrbase when AUTH_TYPE=BASIC * fix: CDR-1401 add AUTH_TYPE in .env.ehrbase if it is set to BASIC or OAUTH * fix: CDR-1401 add AUTH_TYPE in .env.ehrbase in both BASIC and OAUTH types * fix: CDR-1401 enable all test suites * fix: CDR-1401 prepare for PR * fix: CDR-1401 get integration-tests using tag latest - ready for PR * fix: CDR-1401 enable back integration-tests tag latest-feature to make Robot tests passing in feature branch * fix: CDR-1401 rename Keycloak realm and client_id, provide new exported keycloak realm+users * fix: remove not used users and roles * fix: CDR-1401 restore latest tag for integration-tests
…tch precedence strategies
…' into feature/fix-stored-aql-not-exist # Conflicts: # service/src/main/java/org/ehrbase/service/StoredQueryServiceImp.java
Fix HTTP 500 in case stored query does not exist
# Conflicts: # service/src/main/java/org/ehrbase/service/StoredQueryServiceImp.java
Feature/cdr 1207
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