Installation & Quickstart
- Git clone the repository:
git clone https://github.com/IGDRion/EnrichRadar.git- Install R if you don't have it, for example with conda:
conda install conda-forge::r-base- Launch the app:
Rscript /path/to/app.RIt should open the application on your web browser : http://127.0.0.1.
An example file is available in the repository ( ToyExample.csv)?
The data of this example file are from the airway dataset package developped by Michael Love.
It contains data from a RNA-Seq experiment on four human airway smooth muscle cell lines treated with dexamethasone. Details on the gene model and read counting procedure are provided in the package vignette.
The experimental part and data generation was done by Himes BE, Jiang X, Wagner P, Hu R, Wang Q, Klanderman B, Whitaker RM, Duan Q, Lasky-Su J, Nikolos C, Jester W, Johnson M, Panettieri R Jr, Tantisira KG, Weiss ST, Lu Q: 'RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells.' PLoS One. 2014 Jun 13;9(6):e99625. PMID: 24926665. GEO: GSE52778.