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@IGDRion

IGDRion

Long read sequencing @ IGDR (UMR6290 - CNRS - UR1 - INSERM)
README.md

IGDRion Long Read (LR) sequencing with Nanopore Repo 👋

Presenting the repositories for tools used/developed by the Long Read sequencing facility @ IGDR.

For informations about specific projects (sequencing data, primary analysis, seccondary analysis...), see the dedicated private GitLab webpage.

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  1. ANNEXA ANNEXA Public

    Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).

    R 10 3

  2. TransforKmers TransforKmers Public

    Jupyter Notebook 2

Repositories

Showing 8 of 8 repositories
  • ANNEXA Public

    Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).

    IGDRion/ANNEXA’s past year of commit activity
    R 10 MIT 3 0 0 Updated Apr 14, 2025
  • scans Public
    IGDRion/scans’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Apr 14, 2025
  • .github Public

    IGDR Long Read (LR) github organization

    IGDRion/.github’s past year of commit activity
    0 0 0 0 Updated Apr 5, 2025
  • Resist_Portal Public
    IGDRion/Resist_Portal’s past year of commit activity
    R 1 MIT 0 0 0 Updated Jan 7, 2025
  • EnrichRadar Public

    DESeq2 output viewer + make interactive filters

    IGDRion/EnrichRadar’s past year of commit activity
    R 2 0 0 0 Updated Jul 10, 2024
  • TransforKmers Public
    IGDRion/TransforKmers’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Apr 29, 2024
  • ANNEXseq Public

    Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data

    IGDRion/ANNEXseq’s past year of commit activity
    Nextflow 2 MIT 0 2 0 Updated Nov 15, 2023
  • BamType Public

    Quality control of newly discovered transcript annotation

    IGDRion/BamType’s past year of commit activity
    HTML 2 MIT 0 0 0 Updated Jun 30, 2023

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