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HANA

High-performance Automated Next-generation AllHiC.

Dependencies

  • A C++ compiler supports C++11 standards. (GCC >= 4.8.1, MSVC >= 19.0, Clang >= 3.0)
  • Python >= 3.6
  • CMake >= 2.8
  • zlib-devel

Installation

HANA contains the basic C++ binaries and Python libraries for pipeline and advanced framework features. To install the HANA binaries

python hana_install.py -i /path/to/bin

To install the Python library

pip install hana_scaffold

For advanced options, please check Compile & Install.

Usage

HANA supports Python automated scaffold pipeline and directly using the binaries for bash script or other pipeline.

To use HANA Python pipeline, please check Usage (Python Pipeline).

To use HANA standard module directly, please check Usage (Binaries).

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High-performance Automated Next-generation AllHiC

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