Skip to content

Commit 27e0702

Browse files
hannes-ucschannes-ucsc
committed
[r H] Backport: 75bcc52 (#7243, #7561, PR #7570), f0810b1, 797edce (#7243) and 96c5f31 (DataBiosphere/azul-private#298, #7561, PR #7554, PR #7575)
2 parents 1d24dc9 + 0324aa9 commit 27e0702

File tree

2 files changed

+18
-16
lines changed

2 files changed

+18
-16
lines changed

‎deployments/anvilprod/environment.py‎

Lines changed: 9 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -1023,7 +1023,7 @@ def mkdict(previous_catalog: dict[ProjectName, SourceSpec | None],
10231023
bqsrc('f143f633', 'ccdg_broad_ai_ibd_daly_mcgovern_share_wes_20240104_ANV5_202503171541'),
10241024
]))
10251025

1026-
anvil11_sources = mkdict(anvil10_sources, 369, mkdelta([
1026+
anvil11_sources = mkdict(anvil10_sources, 367, mkdelta([
10271027
bqsrc('afe52c93', 'CCDG_Broad_NP_Epilepsy_AUSALF_HMB_IRB_GSA_MD_20250718_ANV5_202508070436'),
10281028
bqsrc('a0e71864', 'CCDG_Broad_NP_Epilepsy_AUSALF_HMB_IRB_WES_20250718_ANV5_202507300051'),
10291029
bqsrc('d4e6fade', 'CCDG_Broad_NP_Epilepsy_AUSAUS_EPIL_BA_MDS_GSA_MD_20250718_ANV5_202508051209'),
@@ -1175,9 +1175,10 @@ def mkdict(previous_catalog: dict[ProjectName, SourceSpec | None],
11751175
# Supersedes snapshot ccdg_broad_np_epilepsy_zafagn_ds_epi_como_mds_wes… popped below
11761176
bqsrc('4b531498', 'CCDG_Broad_NP_Epilepsy_ZAFAGN_DS_EPI_COMO_MDS_WES_20250721_ANV5_202507301017'),
11771177
bqsrc('bdc5f5a9', 'CCDG_Broad_Spalletta_HMB_NPU_MDS_WES_20250721_ANV5_202507301024'),
1178+
bqsrc('0a21cbfd', 'CMG_BaylorHopkins_HMB_IRB_NPU_WES_20221020_ANV5_202402290528', pop),
1179+
bqsrc('d321333c', 'CMG_BaylorHopkins_HMB_NPU_WES_20230525_ANV5_202402290537', pop),
11781180
bqsrc('2b98851b', 'CMG_Yale_GRU_20221020_ANV5_202507091800'),
11791181
bqsrc('83ab11a0', 'CMH_GAFK_R5_20250801_ANV5_202508011248'),
1180-
bqsrc('3f7226ca', 'ENCORE_293T_20250925_ANV5_202509251455', pop),
11811182
bqsrc('b0e9efde', 'ENCORE_RS293_20250925_ANV5_202509251451', pop),
11821183
bqsrc('262cd5df', 'GREGOR_R03_GRU_20250612_ANV5_202506271443'),
11831184
bqsrc('a50f51b8', 'GREGOR_R03_HMB_20250612_ANV5_202506271503'),
@@ -1194,7 +1195,7 @@ def mkdict(previous_catalog: dict[ProjectName, SourceSpec | None],
11941195
bqsrc('61b6b42b', 'ccdg_broad_np_epilepsy_zafagn_ds_epi_como_mds_wes_20221026_ANV5_202409302116', pop),
11951196
]))
11961197

1197-
anvil12_sources = mkdict(anvil11_sources, 375, mkdelta([
1198+
anvil12_sources = mkdict(anvil11_sources, 373, mkdelta([
11981199
bqsrc('48204a7f', 'CCDG_Broad_CVD_EOCAD_PartnersBiobank_HMB_WES_20230621_ANV5_202510141553'),
11991200
bqsrc('50aed057', 'CCDG_Broad_NP_Epilepsy_AUSAUS_EP_BA_CN_ID_MDS_GSA_MD_20251016_ANV5_202510161935'),
12001201
bqsrc('25e5ec27', 'CCDG_Broad_NP_Epilepsy_USAMON_GRU_WES_20250721_ANV5_202510141558'),
@@ -1219,19 +1220,19 @@ def mkdict(previous_catalog: dict[ProjectName, SourceSpec | None],
12191220
bqsrc('5447de30', 'CMH_GAFK_WGBS_20230327_ANV5_202402062120', pop),
12201221
bqsrc('de339830', 'CMH_GAFK_WGS_20240113_ANV5_202502201948', pop),
12211222
bqsrc('ba97c05c', 'CMH_GAFK_scRNA_20221107_ANV5_202402291004', pop),
1222-
bqsrc('cb38d767', 'Complex_Chromosomal_Changes_R1_20251015_ANV5_202510151904'),
1223-
bqsrc('88c9e80c', 'ENCORE_293T_20251014_ANV5_202510142019'),
1224-
bqsrc('f23886ab', 'ENCORE_RS293_20251014_ANV5_202510141942'),
1223+
bqsrc('3e69f21f', 'Complex_Chromosomal_Changes_R1_20251110_ANV5_202511101946'),
1224+
bqsrc('76ceb22a', 'ENCORE_293T_20251112_ANV5_202511121451'),
1225+
bqsrc('3b16bd9c', 'ENCORE_RS293_20251112_ANV5_202511121422'),
12251226
bqsrc('4096189d', 'GREGOR_R04_GRU_20250917_ANV5_202509221559'),
12261227
bqsrc('f71485a8', 'GREGOR_R04_HMB_20250910_ANV5_202509221540'),
12271228
bqsrc('3b09455f', 'GREGoR_R01_GRU_20240208_ANV5_202510101245'),
12281229
bqsrc('25d953fe', 'GTEx_public_data_20240117_ANV5_202510101251'),
12291230
bqsrc('193dc871', 'GTEx_v10_hg38_20241105_ANV5_202510141951'),
1230-
bqsrc('b7446d70', 'HPRC_20240401_ANV5_202510141559'),
1231+
bqsrc('3dddda4d', 'HPRC_20240401_ANV5_202511121431'),
12311232
bqsrc('33f117db', 'IGVF_GRU_PUB_R1_20251015_ANV5_202510151322'),
12321233
bqsrc('ad1d9ffd', 'IGVF_HMB_MDS_R1_20251028_ANV5_202510281333'),
12331234
bqsrc('ca277df1', 'IGVF_HMB_R1_20251015_ANV5_202510151330'),
1234-
bqsrc('38655702', 'IGVF_Mouse_R1_20251015_ANV5_202510151337'),
1235+
bqsrc('7c901939', 'IGVF_Mouse_R1_20251112_ANV5_202511121500'),
12351236
bqsrc('0570db33', 'MAS_ISO_seq_20240113_ANV5_202510141607'),
12361237
bqsrc('5614f9b2', 'NIMH_Broad_ConvergentNeuro_McCarroll_Eggan_CIRM_GRU_VillageData_20230109_ANV5_202510141609'),
12371238
bqsrc('a314d3c7', 'OurHealth_GRU_R1_20251015_ANV5_202510151901'),

‎deployments/hammerbox/environment.py‎

Lines changed: 9 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -1025,7 +1025,7 @@ def mkdict(previous_catalog: dict[ProjectName, SourceSpec | None],
10251025
bqsrc('f143f633', 'ccdg_broad_ai_ibd_daly_mcgovern_share_wes_20240104_ANV5_202503171541'),
10261026
]))
10271027

1028-
anvil11_sources = mkdict(anvil10_sources, 369, mkdelta([
1028+
anvil11_sources = mkdict(anvil10_sources, 367, mkdelta([
10291029
bqsrc('afe52c93', 'CCDG_Broad_NP_Epilepsy_AUSALF_HMB_IRB_GSA_MD_20250718_ANV5_202508070436'),
10301030
bqsrc('a0e71864', 'CCDG_Broad_NP_Epilepsy_AUSALF_HMB_IRB_WES_20250718_ANV5_202507300051'),
10311031
bqsrc('d4e6fade', 'CCDG_Broad_NP_Epilepsy_AUSAUS_EPIL_BA_MDS_GSA_MD_20250718_ANV5_202508051209'),
@@ -1177,9 +1177,10 @@ def mkdict(previous_catalog: dict[ProjectName, SourceSpec | None],
11771177
# Supersedes snapshot ccdg_broad_np_epilepsy_zafagn_ds_epi_como_mds_wes… popped below
11781178
bqsrc('4b531498', 'CCDG_Broad_NP_Epilepsy_ZAFAGN_DS_EPI_COMO_MDS_WES_20250721_ANV5_202507301017'),
11791179
bqsrc('bdc5f5a9', 'CCDG_Broad_Spalletta_HMB_NPU_MDS_WES_20250721_ANV5_202507301024'),
1180+
bqsrc('0a21cbfd', 'CMG_BaylorHopkins_HMB_IRB_NPU_WES_20221020_ANV5_202402290528', pop),
1181+
bqsrc('d321333c', 'CMG_BaylorHopkins_HMB_NPU_WES_20230525_ANV5_202402290537', pop),
11801182
bqsrc('2b98851b', 'CMG_Yale_GRU_20221020_ANV5_202507091800'),
11811183
bqsrc('83ab11a0', 'CMH_GAFK_R5_20250801_ANV5_202508011248'),
1182-
bqsrc('3f7226ca', 'ENCORE_293T_20250925_ANV5_202509251455', pop),
11831184
bqsrc('b0e9efde', 'ENCORE_RS293_20250925_ANV5_202509251451', pop),
11841185
bqsrc('262cd5df', 'GREGOR_R03_GRU_20250612_ANV5_202506271443'),
11851186
bqsrc('a50f51b8', 'GREGOR_R03_HMB_20250612_ANV5_202506271503'),
@@ -1196,7 +1197,7 @@ def mkdict(previous_catalog: dict[ProjectName, SourceSpec | None],
11961197
bqsrc('61b6b42b', 'ccdg_broad_np_epilepsy_zafagn_ds_epi_como_mds_wes_20221026_ANV5_202409302116', pop),
11971198
]))
11981199

1199-
anvil12_sources = mkdict(anvil11_sources, 375, mkdelta([
1200+
anvil12_sources = mkdict(anvil11_sources, 373, mkdelta([
12001201
bqsrc('48204a7f', 'CCDG_Broad_CVD_EOCAD_PartnersBiobank_HMB_WES_20230621_ANV5_202510141553'),
12011202
bqsrc('50aed057', 'CCDG_Broad_NP_Epilepsy_AUSAUS_EP_BA_CN_ID_MDS_GSA_MD_20251016_ANV5_202510161935'),
12021203
bqsrc('25e5ec27', 'CCDG_Broad_NP_Epilepsy_USAMON_GRU_WES_20250721_ANV5_202510141558'),
@@ -1221,19 +1222,19 @@ def mkdict(previous_catalog: dict[ProjectName, SourceSpec | None],
12211222
bqsrc('5447de30', 'CMH_GAFK_WGBS_20230327_ANV5_202402062120', pop),
12221223
bqsrc('de339830', 'CMH_GAFK_WGS_20240113_ANV5_202502201948', pop),
12231224
bqsrc('ba97c05c', 'CMH_GAFK_scRNA_20221107_ANV5_202402291004', pop),
1224-
bqsrc('cb38d767', 'Complex_Chromosomal_Changes_R1_20251015_ANV5_202510151904'),
1225-
bqsrc('88c9e80c', 'ENCORE_293T_20251014_ANV5_202510142019'),
1226-
bqsrc('f23886ab', 'ENCORE_RS293_20251014_ANV5_202510141942'),
1225+
bqsrc('3e69f21f', 'Complex_Chromosomal_Changes_R1_20251110_ANV5_202511101946'),
1226+
bqsrc('76ceb22a', 'ENCORE_293T_20251112_ANV5_202511121451'),
1227+
bqsrc('3b16bd9c', 'ENCORE_RS293_20251112_ANV5_202511121422'),
12271228
bqsrc('4096189d', 'GREGOR_R04_GRU_20250917_ANV5_202509221559'),
12281229
bqsrc('f71485a8', 'GREGOR_R04_HMB_20250910_ANV5_202509221540'),
12291230
bqsrc('3b09455f', 'GREGoR_R01_GRU_20240208_ANV5_202510101245'),
12301231
bqsrc('25d953fe', 'GTEx_public_data_20240117_ANV5_202510101251'),
12311232
bqsrc('193dc871', 'GTEx_v10_hg38_20241105_ANV5_202510141951'),
1232-
bqsrc('b7446d70', 'HPRC_20240401_ANV5_202510141559'),
1233+
bqsrc('3dddda4d', 'HPRC_20240401_ANV5_202511121431'),
12331234
bqsrc('33f117db', 'IGVF_GRU_PUB_R1_20251015_ANV5_202510151322'),
12341235
bqsrc('ad1d9ffd', 'IGVF_HMB_MDS_R1_20251028_ANV5_202510281333'),
12351236
bqsrc('ca277df1', 'IGVF_HMB_R1_20251015_ANV5_202510151330'),
1236-
bqsrc('38655702', 'IGVF_Mouse_R1_20251015_ANV5_202510151337'),
1237+
bqsrc('7c901939', 'IGVF_Mouse_R1_20251112_ANV5_202511121500'),
12371238
bqsrc('0570db33', 'MAS_ISO_seq_20240113_ANV5_202510141607'),
12381239
bqsrc('5614f9b2', 'NIMH_Broad_ConvergentNeuro_McCarroll_Eggan_CIRM_GRU_VillageData_20230109_ANV5_202510141609'),
12391240
bqsrc('a314d3c7', 'OurHealth_GRU_R1_20251015_ANV5_202510151901'),

0 commit comments

Comments
 (0)