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184 Open 902 Closed
184 Open 902 Closed
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Issues list

Beast 2 home dir problem
#1175 opened Dec 19, 2024 by hrzolix
Refactor Alignment
#1174 opened Dec 12, 2024 by rbouckaert
Associate data with internal nodes via IDs
#1173 opened Nov 24, 2024 by rbouckaert
2
Enhance BEAGLE options
#1172 opened Oct 30, 2024 by rbouckaert
Loading of file.xml failed. Cannot read the array length because "this.patternIndex" is null.
#1171 opened Oct 24, 2024 by mrmancuso
1
BactrianRandomWalkOperator should use "windowSize"
#1169 opened Sep 29, 2024 by walterxie 2.8
BEAST 2 version on bioconda lags behind a bit
#1167 opened Sep 19, 2024 by m-d-grunnill
java.lang.NullPointerException: Cannot invoke "beast.base.evolution.tree.Node.isRoot()" because "<parameter1>" is null
#1162 opened Aug 28, 2024 by liamxg
Add case to Tree.adjustTreeNodeHeights method to accommodate zero-length branches
#1161 opened Aug 12, 2024 by jjmccollum
When is a node's nodeNr ever greater than the root's nodeNr?
#1160 opened Aug 7, 2024 by jacklo225
3
Remove jars when updating packages
#1155 opened Jun 24, 2024 by rbouckaert
1
Feature request: partial monophyly constraints
#1153 opened May 29, 2024 by seraklop
6
Prep for v2.7.7 release
#1152 opened May 29, 2024 by rbouckaert
Make Alignment a StateNode
#1150 opened May 16, 2024 by rbouckaert
Hiccups with preparing package for testing
#1149 opened May 1, 2024 by jacklo225
1
Likelihood incorrectly calculated error
#1148 opened Apr 19, 2024 by jkimsis
5
Resume problem for monophyletic defect
#1147 opened Apr 5, 2024 by walterxie
5
.xml.state not found
#1146 opened Apr 2, 2024 by kesiaeds
5
error in parsing xml with no prior manual editing
#1145 opened Mar 23, 2024 by ptitle
2
BEAST.base installation
#1140 opened Feb 26, 2024 by NRuizVargas
BEAST 2.7.6 not launching on Mac
#1139 opened Feb 22, 2024 by kbhoehn
Add CCD package to list of recommended packages
#1138 opened Jan 31, 2024 by rbouckaert
4
java.lang.Error: randomChoiceUnnormalized falls through -- negative components in input distribution?
#1135 opened Dec 2, 2023 by Sikandar37
2
How can I find out number of patterns and number of partitions from my input file without running Beast2?
#1134 opened Nov 4, 2023 by mzhuangsdsc
6
Robustify package manager
#1133 opened Oct 26, 2023 by rbouckaert
ProTip! Exclude everything labeled bug with -label:bug.