Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Reworked a bit the Makefile, the Documentation, and pulled in some useful older commits from other branches. #78

Open
wants to merge 164 commits into
base: master
Choose a base branch
from
Open

Reworked a bit the Makefile, the Documentation, and pulled in some useful older commits from other branches. #78

wants to merge 164 commits into from

Commits on Aug 26, 2013

  1. Create README.md

    @volshevsky
    volshevsky committed Aug 26, 2013
    Configuration menu
    Copy the full SHA
    ea29e25 View commit details
    Browse the repository at this point in the history

  2. Deleted unused Beam/Parsek files

    @volshevsky
    volshevsky committed Aug 26, 2013
    Configuration menu
    Copy the full SHA
    7486f83 View commit details
    Browse the repository at this point in the history

Commits on Jun 13, 2014

  1. put "#include <mpi.h>" at top of .cpp files for compiler

    @alecjohnson
    alecjohnson committed Jun 13, 2014
    Configuration menu
    Copy the full SHA
    f259f31 View commit details
    Browse the repository at this point in the history

  2. added ${MPI_INCLUDE_PATH} line in CMakeLists needed for parallel HDF5

    @alecjohnson
    alecjohnson committed Jun 13, 2014
    Configuration menu
    Copy the full SHA
    c89cecc View commit details
    Browse the repository at this point in the history

  3. set "WriteMethod = Parallel" for parallel HDF5 in GEM.inp

    @alecjohnson
    alecjohnson committed Jun 13, 2014
    Configuration menu
    Copy the full SHA
    bbd441e View commit details
    Browse the repository at this point in the history

  4. turned on parallel HDF5 by default in main/CMakeLists.txt

    @alecjohnson
    alecjohnson committed Jun 13, 2014
    Configuration menu
    Copy the full SHA
    6d3a8e5 View commit details
    Browse the repository at this point in the history

Commits on Oct 8, 2015

  1. Preparing for merge with volshevsky's "master" branch.

    @PABourdin
    PABourdin committed Oct 8, 2015
    Configuration menu
    Copy the full SHA
    1a32739 View commit details
    Browse the repository at this point in the history

  2. Merge remote-tracking branch 'volshevsky/master'

    @PABourdin
    PABourdin committed Oct 8, 2015
    Configuration menu
    Copy the full SHA
    e8190e7 View commit details
    Browse the repository at this point in the history

  3. Merge pull request #1 from CmPA/amaya-library 

    Merge with "amaya-library" branch.
    @PABourdin
    PABourdin committed Oct 8, 2015
    Configuration menu
    Copy the full SHA
    7555d02 View commit details
    Browse the repository at this point in the history

  4. Added download instructions.

    @PABourdin
    PABourdin committed Oct 8, 2015
    Configuration menu
    Copy the full SHA
    fccbbd5 View commit details
    Browse the repository at this point in the history

  5. Adapting to better resemble the GEM setup from Birn et al. (2001).

    @PABourdin
    PABourdin committed Oct 8, 2015
    Configuration menu
    Copy the full SHA
    9be5325 View commit details
    Browse the repository at this point in the history

  6. Added ".gitignore" for typical C++ projects.

    @PABourdin
    PABourdin committed Oct 8, 2015
    Configuration menu
    Copy the full SHA
    0a0b65b View commit details
    Browse the repository at this point in the history

Commits on Oct 21, 2015

  1. Merge pull request #2 from CmPA/master 

    Merging with current amaya-master.
    @PABourdin
    PABourdin committed Oct 21, 2015
    Configuration menu
    Copy the full SHA
    babf3b8 View commit details
    Browse the repository at this point in the history

  2. Making sure you can actually compile without the H5hut library.

    @PABourdin
    PABourdin committed Oct 21, 2015
    Configuration menu
    Copy the full SHA
    80b76a9 View commit details
    Browse the repository at this point in the history

Commits on Oct 22, 2015

  1. Can replace hard-coded name of executable with $(IPIC3D_EXE).

    @PABourdin
    PABourdin committed Oct 22, 2015
    Configuration menu
    Copy the full SHA
    5c81d42 View commit details
    Browse the repository at this point in the history

  2. When compiling in parallel with "make -j", we need to wait with linki… 

    …ng until the library has been built.
    @PABourdin
    PABourdin committed Oct 22, 2015
    Configuration menu
    Copy the full SHA
    4b67de1 View commit details
    Browse the repository at this point in the history

  3. Simplified significantly and added some explanations for novice users… 

    … (like me).
    @PABourdin
    PABourdin committed Oct 22, 2015
    Configuration menu
    Copy the full SHA
    c6e0ea1 View commit details
    Browse the repository at this point in the history

  4. Restoring original drift velocities in the Z-direction.

    @PABourdin
    PABourdin committed Oct 22, 2015
    Configuration menu
    Copy the full SHA
    c924e93 View commit details
    Browse the repository at this point in the history

  5. Updated and extended documentation for novice users.

    @PABourdin
    PABourdin committed Oct 22, 2015
    Configuration menu
    Copy the full SHA
    d37ee6b View commit details
    Browse the repository at this point in the history

  6. Fixed Makefile to compile and link everything.

    @PABourdin
    PABourdin committed Oct 22, 2015
    Configuration menu
    Copy the full SHA
    3daf69c View commit details
    Browse the repository at this point in the history

  7. Renamed 'ALLOBJ' to 'ALL_OBJS'.

    @PABourdin
    PABourdin committed Oct 22, 2015
    Configuration menu
    Copy the full SHA
    196e475 View commit details
    Browse the repository at this point in the history

  8. Avoid double compilation of 'iPic3D.cpp'.

    @PABourdin
    PABourdin committed Oct 22, 2015
    Configuration menu
    Copy the full SHA
    688da33 View commit details
    Browse the repository at this point in the history

  9. Need to allow a different name of the executable.

    @PABourdin
    PABourdin committed Oct 22, 2015
    Configuration menu
    Copy the full SHA
    feae654 View commit details
    Browse the repository at this point in the history

Commits on Oct 28, 2015

  1. Merge pull request #3 from CmPA/master 

    Merged latest master from CmPA/master.
    @PABourdin
    PABourdin committed Oct 28, 2015
    Configuration menu
    Copy the full SHA
    b2e9093 View commit details
    Browse the repository at this point in the history

Commits on Oct 31, 2015

  1. Default setup should not use any optional packages (pHDF5 or H5HUT), … 

    …but users can uncomment and configure these options.
    @PABourdin
    PABourdin committed Oct 31, 2015
    Configuration menu
    Copy the full SHA
    ad13990 View commit details
    Browse the repository at this point in the history

Commits on Nov 18, 2015

  1. Removed spurious quotes that broke compilation when there are no "IPI… 

    …C_FLAGS".
    @PABourdin
    PABourdin committed Nov 18, 2015
    Configuration menu
    Copy the full SHA
    8338d5c View commit details
    Browse the repository at this point in the history

  2. Some HDF5 library seems to be mandatory, adapting the Makefile to ref… 

    …lect this.
    @PABourdin
    PABourdin committed Nov 18, 2015
    Configuration menu
    Copy the full SHA
    8c59a04 View commit details
    Browse the repository at this point in the history

Commits on Nov 30, 2015

  1. Standardized the names of variables.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    bbb965d View commit details
    Browse the repository at this point in the history

  2. Converted to UNIX formatting (newlines).

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    90e55bc View commit details
    Browse the repository at this point in the history

  3. Improved comments a little.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    5f5db40 View commit details
    Browse the repository at this point in the history

  4. Merge pull request #4 from CmPA/master 

    Bug corrections and Dipole case modifications merged from latest CmPA/master
    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    93c1239 View commit details
    Browse the repository at this point in the history

  5. Fixed some comments. Header was wrong.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    913f70a View commit details
    Browse the repository at this point in the history

  6. Fixed some minor readability issues.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    7d17b93 View commit details
    Browse the repository at this point in the history

  7. Added one comment.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    1a3da8f View commit details
    Browse the repository at this point in the history

  8. Fixed some more comments for readability.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    bca2b27 View commit details
    Browse the repository at this point in the history

  9. Added a warning about non-implemented mover.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    e1fdabc View commit details
    Browse the repository at this point in the history

  10. One more comment fixed for readability.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    a9ff536 View commit details
    Browse the repository at this point in the history

  11. Inserted a comment.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    7775c2b View commit details
    Browse the repository at this point in the history

  12. Added time-dependent fading-in factor, a smooth quintic step function.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    1c3c3e2 View commit details
    Browse the repository at this point in the history

  13. Simplified comments for readability.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    c5f307c View commit details
    Browse the repository at this point in the history

  14. Fixed syntax error.

    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    613ff6e View commit details
    Browse the repository at this point in the history

  15. Added 'myrank' as parameter for the output.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    f808fa0 View commit details
    Browse the repository at this point in the history

  16. Need to refer to the class, fully compiles now.

    @PABourdin
    PABourdin committed Nov 30, 2015
    Configuration menu
    Copy the full SHA
    0561380 View commit details
    Browse the repository at this point in the history

Commits on Dec 2, 2015

  1. changes for Original GEM Simulations

    llechner committed Dec 2, 2015
    Configuration menu
    Copy the full SHA
    71ca574 View commit details
    Browse the repository at this point in the history

  2. bug fixes

    llechner committed Dec 2, 2015
    Configuration menu
    Copy the full SHA
    c015000 View commit details
    Browse the repository at this point in the history

  3. change of HDF5 Output 

    include OutputCycles
    llechner committed Dec 2, 2015
    Configuration menu
    Copy the full SHA
    fa5fd37 View commit details
    Browse the repository at this point in the history

Commits on Mar 4, 2016

  1. Merge branch 'master' of https://github.com/CmPA/iPic3D into CmPA-master 

    Conflicts:
	particles/Particles3D.cpp
    @PABourdin
    PABourdin committed Mar 4, 2016
    Configuration menu
    Copy the full SHA
    ac5cb2f View commit details
    Browse the repository at this point in the history

  2. Resolved conflicts from 'CmPA'. 

    Merge branch 'CmPA-master'
    @PABourdin
    PABourdin committed Mar 4, 2016
    Configuration menu
    Copy the full SHA
    d894e5d View commit details
    Browse the repository at this point in the history

  3. Ignore local changes of Makefile.

    @PABourdin
    PABourdin committed Mar 4, 2016
    Configuration menu
    Copy the full SHA
    7d91dbb View commit details
    Browse the repository at this point in the history

  4. Ignore also the local executable.

    @PABourdin
    PABourdin committed Mar 4, 2016
    Configuration menu
    Copy the full SHA
    7ba1c5a View commit details
    Browse the repository at this point in the history

  5. Removed time-consuming MPI_Barriers that are of no use.

    @PABourdin
    PABourdin committed Mar 4, 2016
    Configuration menu
    Copy the full SHA
    9344677 View commit details
    Browse the repository at this point in the history

  6. Fixed formatting.

    @PABourdin
    PABourdin committed Mar 4, 2016
    Configuration menu
    Copy the full SHA
    0c5675d View commit details
    Browse the repository at this point in the history

  7. I'm not quite seeing why 'By' is fixed only in the outermost y-layer,… 

    … while 'Bx' and 'Bz' are fixed in the three outermost layers. But it seems necessary to fix the B-vector, because it could otherwise turn in any direction parallel to the y-boundary, which we do not want for the "GEM" setup.
    @PABourdin
    PABourdin committed Mar 4, 2016
    Configuration menu
    Copy the full SHA
    6375847 View commit details
    Browse the repository at this point in the history

  8. I do not see a reason why to maintain the inital perturbation for all… 

    … times. The y-boundaries should instead maintain a purely x-parallel magnetic field of amplitude B0.
    @PABourdin
    PABourdin committed Mar 4, 2016
    Configuration menu
    Copy the full SHA
    2b58530 View commit details
    Browse the repository at this point in the history

  9. I now see that the 'tanh' term came from the current sheet, not from … 

    …the perturbation, so we need to connect smoothly to the 'tanh' profile, which was also not the case before. Furthermore, we may optimize a lot here, because the 'tanh' profile only depends on the y-coordinate, not on x or z.
    @PABourdin
    PABourdin committed Mar 4, 2016
    Configuration menu
    Copy the full SHA
    2923d08 View commit details
    Browse the repository at this point in the history

Commits on Mar 7, 2016

  1. Unified hanling of field and particles output parameters: We want "0"… 

    … to switch something off, not "1". Especially we want to be able to obtain ever iteration of particles data for debug purposes.
    @PABourdin
    PABourdin committed Mar 7, 2016
    Configuration menu
    Copy the full SHA
    b2f023f View commit details
    Browse the repository at this point in the history

  2. Reworked a bit the Makefile.

    @PABourdin
    PABourdin committed Mar 7, 2016
    Configuration menu
    Copy the full SHA
    dd66a43 View commit details
    Browse the repository at this point in the history

Commits on Mar 8, 2016

  1. Removed useless comment.

    @PABourdin
    PABourdin committed Mar 8, 2016
    Configuration menu
    Copy the full SHA
    3e5374d View commit details
    Browse the repository at this point in the history

  2. Trying to be a bit more clever when enlarging the buffer. Doubling is… 

    … extremely dangerous (and waste of memory) for large number of particles crossing subdomain boundaries.
    @PABourdin
    PABourdin committed Mar 8, 2016
    Configuration menu
    Copy the full SHA
    58fd918 View commit details
    Browse the repository at this point in the history

  3. Removing useless comments.

    @PABourdin
    PABourdin committed Mar 8, 2016
    Configuration menu
    Copy the full SHA
    f8ee9fb View commit details
    Browse the repository at this point in the history

  4. Releasing the hand-breakes. Why copy the data twice, if changing one … 

    …single pointer is enough?
    @PABourdin
    PABourdin committed Mar 8, 2016
    Configuration menu
    Copy the full SHA
    5889d4c View commit details
    Browse the repository at this point in the history

  5. Not even this extra pointer is needed, since the buffer itself is alr… 

    …eady a pointer...
    @PABourdin
    PABourdin committed Mar 8, 2016
    Configuration menu
    Copy the full SHA
    820751f View commit details
    Browse the repository at this point in the history

  6. We must declare 'temp' only once.

    @PABourdin
    PABourdin committed Mar 8, 2016
    Configuration menu
    Copy the full SHA
    c1562b2 View commit details
    Browse the repository at this point in the history

Commits on Mar 9, 2016

  1. Format string was broken, this version at least fits from the variabl… 

    …e types.
    @PABourdin
    PABourdin committed Mar 9, 2016
    Configuration menu
    Copy the full SHA
    8cd11f7 View commit details
    Browse the repository at this point in the history

Commits on Mar 14, 2016

  1. A particle that was deleted does not need space in the communication … 

    …buffer.
    @PABourdin
    PABourdin committed Mar 14, 2016
    Configuration menu
    Copy the full SHA
    839d893 View commit details
    Browse the repository at this point in the history

  2. Formatting.

    @PABourdin
    PABourdin committed Mar 14, 2016
    Configuration menu
    Copy the full SHA
    d2b1616 View commit details
    Browse the repository at this point in the history

  3. Switching this experimental feature off.

    @PABourdin
    PABourdin committed Mar 14, 2016
    Configuration menu
    Copy the full SHA
    fa763c0 View commit details
    Browse the repository at this point in the history

  4. Renaming "GEMOriginal" to "GEM-original" and adding a swamp diffusion… 

    … layer in the magnetic field at the conducting-wall boundary.
    @PABourdin
    PABourdin committed Mar 14, 2016
    Configuration menu
    Copy the full SHA
    ab81ef0 View commit details
    Browse the repository at this point in the history

  5. Restoring Lukas' "GEMOriginal" setup for historical reasons.

    @PABourdin
    PABourdin committed Mar 14, 2016
    Configuration menu
    Copy the full SHA
    d9847eb View commit details
    Browse the repository at this point in the history

  6. Making the swamp diffusion stronger in B_y and actually fix B_y and B… 

    …_z to exactly zero at the y-boundaries.
    @PABourdin
    PABourdin committed Mar 14, 2016
    Configuration menu
    Copy the full SHA
    5244458 View commit details
    Browse the repository at this point in the history

Commits on Mar 15, 2016

  1. Damp away also electric fields.

    @PABourdin
    PABourdin committed Mar 15, 2016
    Configuration menu
    Copy the full SHA
    71796b7 View commit details
    Browse the repository at this point in the history

  2. Formatting.

    @PABourdin
    PABourdin committed Mar 15, 2016
    Configuration menu
    Copy the full SHA
    fa89f3b View commit details
    Browse the repository at this point in the history

Commits on Apr 28, 2016

  1. Added possibility to set debug compiler options.

    @PABourdin
    PABourdin committed Apr 28, 2016
    Configuration menu
    Copy the full SHA
    71a2d4a View commit details
    Browse the repository at this point in the history

  2. Added possibility to choose a small perturbation.

    @PABourdin
    PABourdin committed Apr 28, 2016
    Configuration menu
    Copy the full SHA
    6949a4b View commit details
    Browse the repository at this point in the history

Commits on Apr 30, 2016

  1. Renamed functions for global sum and global maximum.

    @PABourdin
    PABourdin committed Apr 30, 2016
    Configuration menu
    Copy the full SHA
    8c7c18f View commit details
    Browse the repository at this point in the history

  2. Disabling for now the fading in of forces.

    @PABourdin
    PABourdin committed Apr 30, 2016
    Configuration menu
    Copy the full SHA
    d58287d View commit details
    Browse the repository at this point in the history

  3. Formatting.

    @PABourdin
    PABourdin committed Apr 30, 2016
    Configuration menu
    Copy the full SHA
    c526ad2 View commit details
    Browse the repository at this point in the history

  4. Fading is now de-/activated inside the 'getFadeFactor' function.

    @PABourdin
    PABourdin committed Apr 30, 2016
    Configuration menu
    Copy the full SHA
    5e08f47 View commit details
    Browse the repository at this point in the history

Commits on May 2, 2016

  1. Say something, if you leave...

    @PABourdin
    PABourdin committed May 2, 2016
    Configuration menu
    Copy the full SHA
    df907d7 View commit details
    Browse the repository at this point in the history

Commits on May 3, 2016

  1. Added reference input file for letter submission.

    @PABourdin
    PABourdin committed May 3, 2016
    Configuration menu
    Copy the full SHA
    984fa52 View commit details
    Browse the repository at this point in the history

Commits on Jul 4, 2016

  1. Changed the numebr of cycles in GEM.inp

    Giovanni Lapenta committed Jul 4, 2016
    Configuration menu
    Copy the full SHA
    0c76580 View commit details
    Browse the repository at this point in the history

Commits on Jul 8, 2016

  1. Resolved conflict.

    @PABourdin
    PABourdin committed Jul 8, 2016
    Configuration menu
    Copy the full SHA
    4223257 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'Gianni-open' of https://github.com/CmPA/iPic3D 

    Conflicts:
	inputfiles/GEM.inp
    @PABourdin
    PABourdin committed Jul 8, 2016
    Configuration menu
    Copy the full SHA
    1d20b61 View commit details
    Browse the repository at this point in the history

  3. Adding security break-point for not running into problems, later.

    @PABourdin
    PABourdin committed Jul 8, 2016
    Configuration menu
    Copy the full SHA
    3a8d29c View commit details
    Browse the repository at this point in the history

Commits on Jul 10, 2016

  1. Made swamp region more configurable and removed cloned code into a loop.

    @PABourdin
    PABourdin committed Jul 10, 2016
    Configuration menu
    Copy the full SHA
    ebc726e View commit details
    Browse the repository at this point in the history

  2. Apply swamp region dynamically in the outer 1/40 of grid layers. Incr… 

    …easing resolution hence reduces the swamp layer.
    @PABourdin
    PABourdin committed Jul 10, 2016
    Configuration menu
    Copy the full SHA
    9b13d4f View commit details
    Browse the repository at this point in the history

Commits on Jul 14, 2016

  1. Merge pull request #7 from CmPA/master 

    Correcting restart bug
    @PABourdin
    PABourdin authored Jul 14, 2016
    Configuration menu
    Copy the full SHA
    fcce934 View commit details
    Browse the repository at this point in the history

Commits on Aug 20, 2016

  1. No includes are needed for linking.

    @PABourdin
    PABourdin committed Aug 20, 2016
    Configuration menu
    Copy the full SHA
    ecc73e4 View commit details
    Browse the repository at this point in the history

  2. Removed useless output.

    @PABourdin
    PABourdin committed Aug 20, 2016
    Configuration menu
    Copy the full SHA
    6a953d6 View commit details
    Browse the repository at this point in the history

Commits on Sep 9, 2016

  1. Removed double code.

    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    deb0200 View commit details
    Browse the repository at this point in the history

  2. Removed empty lines and added 'break' where missing.

    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    96f3292 View commit details
    Browse the repository at this point in the history

  3. Formatted commented-out code nicely.

    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    37f349f View commit details
    Browse the repository at this point in the history

  4. Activated commented-out handling of Z boundary - I can't quite see wh… 

    …y it was deactivated...!
    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    e701821 View commit details
    Browse the repository at this point in the history

  5. Corrected code formatting.

    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    df5ba38 View commit details
    Browse the repository at this point in the history

  6. Removed commented-out code that was proven to be wrong anyways.

    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    ed09330 View commit details
    Browse the repository at this point in the history

  7. Only need to call subroutine, if really a boundary condition is to be… 

    … applied.
    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    c935bbc View commit details
    Browse the repository at this point in the history

  8. Corrected code formatting.

    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    23f8be7 View commit details
    Browse the repository at this point in the history

  9. New bounary condition treatment needs box size if both, left and righ… 

    …t cases.
    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    37c02ba View commit details
    Browse the repository at this point in the history

  10. New functions to apply particle boundary conditions with less compari… 

    …sons making them more efficient.
    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    42781d8 View commit details
    Browse the repository at this point in the history

  11. Adapted header file accordingly...

    @PABourdin
    PABourdin committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    10f5cb8 View commit details
    Browse the repository at this point in the history

Commits on Sep 10, 2016

  1. The existence of a neighbour is irrelevant for applying these boundar… 

    …y conditions! This saves us a lot of comparisons...
    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    01e66e2 View commit details
    Browse the repository at this point in the history

  2. Add possibility to override the periodicity of fields for the particl… 

    …e boundary conditions.
    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    fb49b4c View commit details
    Browse the repository at this point in the history

  3. Reorganized particle's boundary conditions completely. Computation sh… 

    …ould be faster now.
    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    bcbf484 View commit details
    Browse the repository at this point in the history

  4. Code formatting.

    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    b9376a1 View commit details
    Browse the repository at this point in the history

  5. Fixed typo.

    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    52174b6 View commit details
    Browse the repository at this point in the history

  6. Reduced amout of output drastically without loosing information.

    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    53ee29f View commit details
    Browse the repository at this point in the history

  7. Grouping particle boundary conditions together and apply them before … 

    …sending particles to neighbours.
    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    487e816 View commit details
    Browse the repository at this point in the history

  8. Fixed typo.

    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    188a8c6 View commit details
    Browse the repository at this point in the history

  9. Fixed typo.

    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    98995a4 View commit details
    Browse the repository at this point in the history

  10. Fixed another forgotten ;

    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    ac7c24f View commit details
    Browse the repository at this point in the history

  11. Trying to be a bit more clever and continue to process the other boun… 

    …daries after one boundary condition might have been applied.
    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    2c755d7 View commit details
    Browse the repository at this point in the history

  12. Minor clean-up and optimization.

    @PABourdin
    PABourdin committed Sep 10, 2016
    Configuration menu
    Copy the full SHA
    8554cbf View commit details
    Browse the repository at this point in the history

Commits on Sep 12, 2016

  1. Fixed an obvious Copy&Paste error.

    @PABourdin
    PABourdin committed Sep 12, 2016
    Configuration menu
    Copy the full SHA
    0183ff1 View commit details
    Browse the repository at this point in the history

Commits on Sep 13, 2016

  1. Fixed obvious mistake: When interpolating from nodes to centers, all … 

    …centers can and should be set. Added hint on possible inconsistency in the center-to-node interpolation.
    @PABourdin
    PABourdin committed Sep 13, 2016
    Configuration menu
    Copy the full SHA
    6bda467 View commit details
    Browse the repository at this point in the history

  2. Added new parameter to set the periodicity for particles separate to … 

    …the fields.
    @PABourdin
    PABourdin committed Sep 13, 2016
    Configuration menu
    Copy the full SHA
    acb7eb8 View commit details
    Browse the repository at this point in the history

  3. Need to treat also the degenerated case correctly.

    @PABourdin
    PABourdin committed Sep 13, 2016
    Configuration menu
    Copy the full SHA
    28188de View commit details
    Browse the repository at this point in the history

  4. Make sure, other boundary conditions are surely switched off when the… 

    … respective direction is degenerated.
    @PABourdin
    PABourdin committed Sep 13, 2016
    Configuration menu
    Copy the full SHA
    7fd3d82 View commit details
    Browse the repository at this point in the history

Commits on Sep 14, 2016

  1. Reorganized deleting of the particle from processor, to make coding e… 

    …rrors less likely.
    @PABourdin
    PABourdin committed Sep 14, 2016
    Configuration menu
    Copy the full SHA
    6dff0fe View commit details
    Browse the repository at this point in the history

  2. Making sure we never free an empty array.

    @PABourdin
    PABourdin committed Sep 14, 2016
    Configuration menu
    Copy the full SHA
    d56d910 View commit details
    Browse the repository at this point in the history

  3. Cleanup of buffering code.

    @PABourdin
    PABourdin committed Sep 14, 2016
    Configuration menu
    Copy the full SHA
    3fe7e5f View commit details
    Browse the repository at this point in the history

  4. Renamed misleading variable name to 'wrong_domain'.

    @PABourdin
    PABourdin committed Sep 14, 2016
    Configuration menu
    Copy the full SHA
    053c012 View commit details
    Browse the repository at this point in the history

  5. This variable is not used anywhere.

    @PABourdin
    PABourdin committed Sep 14, 2016
    Configuration menu
    Copy the full SHA
    310e7b3 View commit details
    Browse the repository at this point in the history

Commits on Sep 15, 2016

  1. Reorganized sending/receiving buffers completely.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    99229ad View commit details
    Browse the repository at this point in the history

  2. Simplified calculation of the maximum numbers of particles leaving th… 

    …e domain.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    9a72af1 View commit details
    Browse the repository at this point in the history

  3. Prepared to trigger communication on each direction independently. E.… 

    …g., if no particles are to be transported in the Z-direction, we can fully avoid this communication, which should accelarate communication for 2D cases by one third.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    d3c5560 View commit details
    Browse the repository at this point in the history

  4. Simplified and generalized the function that buffers leaving particle… 

    …s, this removes redundant code.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    7d0143e View commit details
    Browse the repository at this point in the history

  5. Fixed a mistake from last commit, position in the buffer is now compu… 

    …ted outside the buffering function, which reduces the amout of multiplications in that function to about one seventh.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    7c15f5a View commit details
    Browse the repository at this point in the history

  6. Replaced 'MIN_VAL' with a more reasonable name and of course also wit… 

    …h a much saver value that always should be located far outside any physical particles.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    7220d3b View commit details
    Browse the repository at this point in the history

  7. Code formatting.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    7e6b1ec View commit details
    Browse the repository at this point in the history

  8. Removed 'nplast', which is completely unnecessary.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    0357f76 View commit details
    Browse the repository at this point in the history

  9. Fixed some typos from last commit.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    173f607 View commit details
    Browse the repository at this point in the history

  10. Removed 'nplast' also from here, like done in "Particles3Dcomm".

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    2f73fcc View commit details
    Browse the repository at this point in the history

  11. Filling communication buffers from the beginning and add end marker.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    81b4fe3 View commit details
    Browse the repository at this point in the history

  12. There should not be a need any more to initialize communication buffe… 

    …rs, since we now have for sure an end marker.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    f20737d View commit details
    Browse the repository at this point in the history

  13. "communicateParticles" of course expects the number of elements in th… 

    …e buffer, not the number of particles.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    51ae00c View commit details
    Browse the repository at this point in the history

  14. Added default parameter to stop the automatic extension of the commun… 

    …ication buffer.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    aff487d View commit details
    Browse the repository at this point in the history

  15. Forgot to actually return the global maximum.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    0c28ed2 View commit details
    Browse the repository at this point in the history

  16. Just for security, making sure the recieved buffer is empty after add… 

    …ing the particles to the local domain.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    ce4ce17 View commit details
    Browse the repository at this point in the history

  17. Fixed a typo.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    82b5709 View commit details
    Browse the repository at this point in the history

  18. Moved these few code lines to main particle routine. This allows to e… 

    …asier check, which communication is really needed.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    3b3d862 View commit details
    Browse the repository at this point in the history

  19. Treating each communication direction differently means there is no u… 

    …se anymore for 'npExitingMax'.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    0790464 View commit details
    Browse the repository at this point in the history

  20. 'globalMaximum' expects a primary value.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    c914a43 View commit details
    Browse the repository at this point in the history

  21. Changed a comment a litte.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    cb6138a View commit details
    Browse the repository at this point in the history

  22. Made some useful booleans global.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    a4d32c9 View commit details
    Browse the repository at this point in the history

  23. Renamed all 'ptVCT' to 'vct', as it is the name in the rest of the code.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    3b96f14 View commit details
    Browse the repository at this point in the history

  24. Try to be more efficient on very fast for-loops.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    2113d5a View commit details
    Browse the repository at this point in the history

  25. Got sick of using a re-invented wheel, trying "std::vector" instead.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    dd2d413 View commit details
    Browse the repository at this point in the history

  26. Initialize all buffer elements to 'INVALID_PARTICLE'.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    ca84b50 View commit details
    Browse the repository at this point in the history

  27. Using more reliable way to access pointer to first element of the buf… 

    …fer.
    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    4556347 View commit details
    Browse the repository at this point in the history

  28. 'npExit' is without function now.

    @PABourdin
    PABourdin committed Sep 15, 2016
    Configuration menu
    Copy the full SHA
    c6e71e3 View commit details
    Browse the repository at this point in the history

Commits on Sep 16, 2016

  1. Reorganized communication completely, again. 'communicate' can now on… 

    …ly return with success and will communicate iteratively until all particles have reached their destination. This makes 'isMessagingDone' superfluous.
    @PABourdin
    PABourdin committed Sep 16, 2016
    Configuration menu
    Copy the full SHA
    3def28e View commit details
    Browse the repository at this point in the history

  2. We want to initialize buffers to an integer multiple ov 'nVar'.

    @PABourdin
    PABourdin committed Sep 16, 2016
    Configuration menu
    Copy the full SHA
    ddb1b6a View commit details
    Browse the repository at this point in the history

  3. Just for security, clear temporary buffer after usage.

    @PABourdin
    PABourdin committed Sep 16, 2016
    Configuration menu
    Copy the full SHA
    6c576bb View commit details
    Browse the repository at this point in the history

  4. Need to deal also with empty buffers.

    @PABourdin
    PABourdin committed Sep 16, 2016
    Configuration menu
    Copy the full SHA
    ef3bc7c View commit details
    Browse the repository at this point in the history

  5. Why interpolate if you can have "the real thing"(TM).

    @PABourdin
    PABourdin committed Sep 16, 2016
    Configuration menu
    Copy the full SHA
    2062841 View commit details
    Browse the repository at this point in the history

Commits on Sep 17, 2016

  1. Looks like 'B[xyz]_ext' was used uninitialized in case there was no e… 

    …xplicit initialization, e.g. for a dipole.
    @PABourdin
    PABourdin committed Sep 17, 2016
    Configuration menu
    Copy the full SHA
    fa05a08 View commit details
    Browse the repository at this point in the history

Commits on Sep 18, 2016

  1. Obviously, one grid layer was uninitialized for the damping factor.

    @PABourdin
    PABourdin committed Sep 18, 2016
    Configuration menu
    Copy the full SHA
    dd3578a View commit details
    Browse the repository at this point in the history

Commits on Oct 2, 2016

  1. Will now store the number of particles in the first element of the co… 

    …mmunication buffer. Previous SegFault is solved.
    @PABourdin
    PABourdin committed Oct 2, 2016
    Configuration menu
    Copy the full SHA
    cc5ac2a View commit details
    Browse the repository at this point in the history

Commits on Oct 31, 2016

  1. Converted particle arrays to resizable C++ vectors.

    @PABourdin
    PABourdin committed Oct 31, 2016
    Configuration menu
    Copy the full SHA
    21059ed View commit details
    Browse the repository at this point in the history

Commits on Feb 15, 2017

  1. 'Lambda' was used uninitialized.

    @PABourdin
    PABourdin committed Feb 15, 2017
    Configuration menu
    Copy the full SHA
    fe6140c View commit details
    Browse the repository at this point in the history

  2. Added missing EOL after 'rhoINIT'.

    @PABourdin
    PABourdin committed Feb 15, 2017
    Configuration menu
    Copy the full SHA
    c388051 View commit details
    Browse the repository at this point in the history

Commits on Aug 2, 2017

  1. Merge branch 'master' of https://github.com/CmPA/iPic3D into CmPA-master 

    Conflicts:
	fields/EMfields3D.cpp
    @PABourdin
    PABourdin committed Aug 2, 2017
    Configuration menu
    Copy the full SHA
    88300bb View commit details
    Browse the repository at this point in the history

  2. Merge branch 'CmPA-master'

    @PABourdin
    PABourdin committed Aug 2, 2017
    Configuration menu
    Copy the full SHA
    092f1a4 View commit details
    Browse the repository at this point in the history

Commits on Nov 14, 2018

  1. Merge pull request #9 from CmPA/master 

    Merging new files from CmPA
    @PABourdin
    PABourdin authored Nov 14, 2018
    Configuration menu
    Copy the full SHA
    bf33824 View commit details
    Browse the repository at this point in the history