Reworked a bit the Makefile, the Documentation, and pulled in some useful older commits from other branches. #78

PABourdin · 2015-10-22T01:29:12Z

Also I have changed the GEM.inp to better resemble the original GEM setup from Birn et al. (2001).

It is now also possible to easily switch on/off the HDF5 and/or H5hut library.

Merge with "amaya-library" branch.

Merging with current amaya-master.

…ng until the library has been built.

… (like me).

Merged latest master from CmPA/master.

…but users can uncomment and configure these options.

…C_FLAGS".

…lect this.

…e buffer, not the number of particles.

…ication buffer.

…ing the particles to the local domain.

…asier check, which communication is really needed.

…se anymore for 'npExitingMax'.

…fer.

…ly return with success and will communicate iteratively until all particles have reached their destination. This makes 'isMessagingDone' superfluous.

…xplicit initialization, e.g. for a dipole.

…mmunication buffer. Previous SegFault is solved.

Conflicts: fields/EMfields3D.cpp

Merging new files from CmPA

volshevsky and others added 30 commits August 26, 2013 12:53

Create README.md

ea29e25

Deleted unused Beam/Parsek files

7486f83

put "#include <mpi.h>" at top of .cpp files for compiler

f259f31

added ${MPI_INCLUDE_PATH} line in CMakeLists needed for parallel HDF5

c89cecc

set "WriteMethod = Parallel" for parallel HDF5 in GEM.inp

bbd441e

turned on parallel HDF5 by default in main/CMakeLists.txt

6d3a8e5

Preparing for merge with volshevsky's "master" branch.

1a32739

Merge remote-tracking branch 'volshevsky/master'

e8190e7

Merge pull request #1 from CmPA/amaya-library

7555d02

Merge with "amaya-library" branch.

Added download instructions.

fccbbd5

Adapting to better resemble the GEM setup from Birn et al. (2001).

9be5325

Added ".gitignore" for typical C++ projects.

0a0b65b

Merge pull request #2 from CmPA/master

babf3b8

Merging with current amaya-master.

Making sure you can actually compile without the H5hut library.

80b76a9

Can replace hard-coded name of executable with $(IPIC3D_EXE).

5c81d42

When compiling in parallel with "make -j", we need to wait with linki…

4b67de1

…ng until the library has been built.

Simplified significantly and added some explanations for novice users…

c6e0ea1

… (like me).

Restoring original drift velocities in the Z-direction.

c924e93

Updated and extended documentation for novice users.

d37ee6b

Fixed Makefile to compile and link everything.

3daf69c

Renamed 'ALLOBJ' to 'ALL_OBJS'.

196e475

Avoid double compilation of 'iPic3D.cpp'.

688da33

Need to allow a different name of the executable.

feae654

Merge pull request #3 from CmPA/master

b2e9093

Merged latest master from CmPA/master.

Default setup should not use any optional packages (pHDF5 or H5HUT), …

ad13990

…but users can uncomment and configure these options.

Removed spurious quotes that broke compilation when there are no "IPI…

8338d5c

…C_FLAGS".

Some HDF5 library seems to be mandatory, adapting the Makefile to ref…

8c59a04

…lect this.

Standardized the names of variables.

bbb965d

Converted to UNIX formatting (newlines).

90e55bc

Improved comments a little.

5f5db40

PABourdin and others added 30 commits September 15, 2016 17:19

"communicateParticles" of course expects the number of elements in th…

51ae00c

…e buffer, not the number of particles.

Added default parameter to stop the automatic extension of the commun…

aff487d

…ication buffer.

Forgot to actually return the global maximum.

0c28ed2

Just for security, making sure the recieved buffer is empty after add…

ce4ce17

…ing the particles to the local domain.

Fixed a typo.

82b5709

Moved these few code lines to main particle routine. This allows to e…

3b3d862

…asier check, which communication is really needed.

Treating each communication direction differently means there is no u…

0790464

…se anymore for 'npExitingMax'.

'globalMaximum' expects a primary value.

c914a43

Changed a comment a litte.

cb6138a

Made some useful booleans global.

a4d32c9

Renamed all 'ptVCT' to 'vct', as it is the name in the rest of the code.

3b96f14

Try to be more efficient on very fast for-loops.

2113d5a

Got sick of using a re-invented wheel, trying "std::vector" instead.

dd2d413

Initialize all buffer elements to 'INVALID_PARTICLE'.

ca84b50

Using more reliable way to access pointer to first element of the buf…

4556347

…fer.

'npExit' is without function now.

c6e71e3

Reorganized communication completely, again. 'communicate' can now on…

3def28e

…ly return with success and will communicate iteratively until all particles have reached their destination. This makes 'isMessagingDone' superfluous.

We want to initialize buffers to an integer multiple ov 'nVar'.

ddb1b6a

Just for security, clear temporary buffer after usage.

6c576bb

Need to deal also with empty buffers.

ef3bc7c

Why interpolate if you can have "the real thing"(TM).

2062841

Looks like 'B[xyz]_ext' was used uninitialized in case there was no e…

fa05a08

…xplicit initialization, e.g. for a dipole.

Obviously, one grid layer was uninitialized for the damping factor.

dd3578a

Will now store the number of particles in the first element of the co…

cc5ac2a

…mmunication buffer. Previous SegFault is solved.

Converted particle arrays to resizable C++ vectors.

21059ed

'Lambda' was used uninitialized.

fe6140c

Added missing EOL after 'rhoINIT'.

c388051

Merge branch 'master' of https://github.com/CmPA/iPic3D into CmPA-master

88300bb

Conflicts: fields/EMfields3D.cpp

Merge branch 'CmPA-master'

092f1a4

Merge pull request #9 from CmPA/master

bf33824

Merging new files from CmPA

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Reworked a bit the Makefile, the Documentation, and pulled in some useful older commits from other branches. #78

Reworked a bit the Makefile, the Documentation, and pulled in some useful older commits from other branches. #78

PABourdin commented Oct 22, 2015

Reworked a bit the Makefile, the Documentation, and pulled in some useful older commits from other branches. #78

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Reworked a bit the Makefile, the Documentation, and pulled in some useful older commits from other branches. #78

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PABourdin commented Oct 22, 2015