Fix clashing ticket ids

[islean]

Description

This PR reworks filtering on ticket ids to go via the Order table instead of the tickets column found in the Case table. Closes #3702

Added

Changed

• Filtering on ticket id is done in the Order table

Fixed

How to prepare for test

• Ssh to relevant server (depending on type of change)
• Use stage: us
• Paxa the environment: paxa
• Install on stage (example for Hasta):

  bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_cg -t cg -b fix-ticket-clashes -a

How to test

• Do ...

Expected test outcome

• Check that ...
• Take a screenshot and attach or copy/paste the output.

Review

• Tests executed by
• "Merge and deploy" approved by
  Thanks for filling in who performed the code review and the test!

This version is a

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

Implementation Plan

• Document in ...
• Deploy this branch on ...
• Inform to ...

[diitaz93]

Looks good 👍

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

[islean]

Tested:

Ran cg decompress ticket <ticket_id> and it successfully chose the relevant sample

[islean]

Deployed to Hasta:

done.
Log deploy... done.
cg, version 63.5.13
remote: Enumerating objects: 11, done.
remote: Counting objects: 100% (11/11), done.
remote: Compressing objects: 100% (6/6), done.
remote: Total 11 (delta 4), reused 9 (delta 4), pack-reused 0 (from 0)
Unpacking objects: 100% (11/11), done.
From https://github.com/Clinical-Genomics/cg
   d6422d3..af54aaa  master     -> origin/master
 * [new tag]         v63.5.13   -> v63.5.13
Already on 'master'
Your branch is behind 'origin/master' by 2 commits, and can be fast-forwarded.
  (use "git pull" to update your local branch)
Updating d6422d3..af54aaa
Fast-forward
 .bumpversion.cfg                                 |  2 +-
 cg/__init__.py                                   |  2 +-
 cg/store/base.py                                 | 13 ++++++++++++-
 cg/store/crud/read.py                            | 27 ++++++++++++++-------------
 cg/store/filters/status_case_filters.py          |  6 ------
 pyproject.toml                                   |  2 +-
 tests/store/filters/test_status_cases_filters.py | 31 -------------------------------
 tests/store/filters/test_status_order_filters.py | 51 +++++++++++++++++++++++++++++++++++++++++++++++++++
 tests/store_helpers.py                           |  7 ++++++-
 9 files changed, 86 insertions(+), 55 deletions(-)
 create mode 100644 tests/store/filters/test_status_order_filters.py
/home/isak.ohlsson
INFO  [alembic.runtime.migration] Context impl MySQLImpl.
INFO  [alembic.runtime.migration] Will assume non-transactional DDL.
[isak.ohlsson@hasta:~] [P_base] $