Export new concentration field (#2785) (patch)

### Fixed

- New concentration is uploaded to LIMS

cg/apps/lims/api.py

@@ -90,6 +90,7 @@ def _export_sample(self, lims_sample):
                 else None
             ),
             "comment": udfs.get("comment"),
+            "concentration_ng_ul": udfs.get("Concentration (ng/ul)"),
         }
 
     def get_received_date(self, lims_id: str) -> dt.date:

cg/constants/lims.py

@@ -12,6 +12,7 @@
     "comment": "Comment",
     "control": "Control",
     "concentration": "Concentration (nM)",
+    "concentration_ng_ul": "Concentration (ng/ul)",
     "concentration_sample": "Sample Conc.",
     "customer": "customer",
     "data_analysis": "Data Analysis",

cg/meta/orders/case_submitter.py

@@ -9,7 +9,7 @@
 from cg.meta.orders.submitter import Submitter
 from cg.models.orders.order import OrderIn
 from cg.models.orders.samples import Of1508Sample, OrderInSample
-from cg.store.models import ApplicationVersion, Customer, Case, CaseSample, Sample
+from cg.store.models import ApplicationVersion, Case, CaseSample, Customer, Sample
 
 LOG = logging.getLogger(__name__)
 

cg/models/lims/sample.py

@@ -13,6 +13,7 @@ class Udf(BaseModel):
     comment: str | None
     concentration: str | None
     concentration_sample: str | None
+    concentration_ng_ul: str | None
     customer: str
     control: str | None
     data_analysis: str | None

cg/models/orders/samples.py

@@ -43,6 +43,7 @@ class OrderInSample(BaseModel):
     priority: PriorityEnum = PriorityEnum.standard
     require_qc_ok: bool = False
     volume: str
+    concentration_ng_ul: str | None
 
     @classmethod
     def is_sample_for(cls, project: OrderType):

tests/fixtures/cgweb_orders/balsamic.json

@@ -12,6 +12,7 @@
       ],
       "comment": "other Elution buffer",
       "container": "96 well plate",
+      "concentration_ng_ul": "18",
       "container_name": "p1",
       "data_analysis": "balsamic",
       "data_delivery": "fastq-analysis-scout",