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Clinical-Genomics · Jan 17, 2025 · 9a0dfd9 · 9a0dfd9
1 parent 99403ea
commit 9a0dfd9
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/tests/cli/workflow/nf_analysis/test_cli_run.py b/tests/cli/workflow/nf_analysis/test_cli_run.py
@@ -206,7 +206,7 @@ def test_resume_case_dry_run(
     case_id: str = request.getfixturevalue(f"{workflow}_case_id")
 
     # GIVEN a mocked config
-    # request.getfixturevalue(f"{workflow}_mock_config")
+    # request.getfixturevalue(f"{workflow}_config")
 
     # WHEN invoking a command with dry-run and nf-tower-id specified
     result = cli_runner.invoke(
@@ -231,7 +231,7 @@ def test_resume_case_with_missing_tower_id(
     cli_runner: CliRunner,
     workflow: Workflow,
     caplog: LogCaptureFixture,
-    raredisease_mock_config,
+    raredisease_config,
     request: FixtureRequest,
 ):
     """Test resume command without providing NF-Tower ID and without existing Trailblazer config file."""
@@ -259,7 +259,7 @@ def test_resume_using_nextflow_dry_run(
     cli_runner: CliRunner,
     workflow: Workflow,
     caplog: LogCaptureFixture,
-    raredisease_mock_config,
+    raredisease_config,
     request: FixtureRequest,
 ):
     """Test command with case_id and config file using nextflow."""

diff --git a/tests/conftest.py b/tests/conftest.py
@@ -4102,7 +4102,7 @@ def taxprofiler_mock_analysis_finish(
 
 
 @pytest.fixture(scope="function")
-def taxprofiler_mock_config(taxprofiler_dir: Path, taxprofiler_case_id: str) -> None:
+def taxprofiler_config(taxprofiler_dir: Path, taxprofiler_case_id: str) -> None:
     """Create CSV sample sheet file for testing."""
     Path.mkdir(Path(taxprofiler_dir, taxprofiler_case_id), parents=True, exist_ok=True)
     Path(taxprofiler_dir, taxprofiler_case_id, f"{taxprofiler_case_id}_samplesheet").with_suffix(