Turn off slurm scout upload (#2918)

Clinical-Genomics · Feb 7, 2024 · 56b605c · 56b605c
1 parent 2179e15
commit 56b605c
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/cg/apps/scout/scoutapi.py b/cg/apps/scout/scoutapi.py
@@ -45,9 +45,9 @@ def upload(self, scout_load_config: Path, force: bool = False):
                 existing_date = existing_case.analysis_date.date()
                 LOG.warning(f"Analysis of case already loaded: {existing_date}")
                 return
-        job_name = "scout_analysis_upload"
-        command: str = f"{self.scout_base_command} " + " ".join(load_command)
-        self.slurm_upload_service.upload(upload_command=command, job_name=job_name, case_id=case_id)
+        LOG.debug("load new Scout case")
+        self.process.run_command(load_command)
+        LOG.debug("Case loaded successfully to Scout")
 
     def export_panels(self, panels: list[str], build: str = GENOME_BUILD_37) -> list[str]:
         """Pass through to export of a list of gene panels.