Revert "feat(raredisease): Add raredisease to cg workflow (#2592)" (#…

…2646) This reverts commit d7fdd9f.
Clinical-Genomics · Oct 31, 2023 · 54f95be · 54f95be
1 parent 2278ac1
commit 54f95be
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diff --git a/alembic/versions/11555a6fb508_add_raredisease_to_analysis_options.py b/alembic/versions/11555a6fb508_add_raredisease_to_analysis_options.py
diff --git a/cg/cli/workflow/base.py b/cg/cli/workflow/base.py
@@ -13,7 +13,6 @@
 from cg.cli.workflow.mip_dna.base import mip_dna
 from cg.cli.workflow.mip_rna.base import mip_rna
 from cg.cli.workflow.mutant.base import mutant
-from cg.cli.workflow.raredisease.base import raredisease
 from cg.cli.workflow.rnafusion.base import rnafusion
 from cg.cli.workflow.taxprofiler.base import taxprofiler
 
@@ -32,7 +31,6 @@ def workflow():
 workflow.add_command(mip_rna)
 workflow.add_command(fluffy)
 workflow.add_command(mutant)
-workflow.add_command(raredisease)
 workflow.add_command(rnafusion)
 workflow.add_command(taxprofiler)
 workflow.add_command(fastq)
diff --git a/cg/cli/workflow/raredisease/__init__.py b/cg/cli/workflow/raredisease/__init__.py
diff --git a/cg/cli/workflow/raredisease/base.py b/cg/cli/workflow/raredisease/base.py
diff --git a/cg/meta/workflow/raredisease.py b/cg/meta/workflow/raredisease.py
diff --git a/cg/models/raredisease/__init__.py b/cg/models/raredisease/__init__.py
diff --git a/tests/cli/workflow/raredisease/conftest.py b/tests/cli/workflow/raredisease/conftest.py
diff --git a/tests/cli/workflow/raredisease/test_cli_raredisease_compound_commands.py b/tests/cli/workflow/raredisease/test_cli_raredisease_compound_commands.py