rename service

Clinical-Genomics · Oct 11, 2024 · 4e1977f · 4e1977f
1 parent 35254c0
commit 4e1977f
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Showing 4 changed files with 11 additions and 11 deletions.
diff --git a/cg/services/run_devices/run_names/pacbio.py b/cg/services/run_devices/run_names/pacbio.py
@@ -1,9 +1,9 @@
 from pathlib import Path
 
-from cg.services.run_devices.run_names.service import RunNamesService
+from cg.services.run_devices.run_names.service import RunDirectoryNamesService
 
 
-class PacbioRunNamesService(RunNamesService):
+class PacbioRunDirectoryNamesService(RunDirectoryNamesService):
 
     def get_run_names(self) -> list[str]:
         """

diff --git a/cg/services/run_devices/run_names/service.py b/cg/services/run_devices/run_names/service.py
@@ -1,7 +1,7 @@
 from abc import ABC, abstractmethod
 
 
-class RunNamesService(ABC):
+class RunDirectoryNamesService(ABC):
 
     def __init__(self, run_directory: str):
         self.run_directory = run_directory

diff --git a/tests/fixture_plugins/pacbio_fixtures/service_fixtures.py b/tests/fixture_plugins/pacbio_fixtures/service_fixtures.py
@@ -21,7 +21,7 @@
     PacBioRunDataGenerator,
 )
 from cg.services.run_devices.pacbio.run_file_manager.run_file_manager import PacBioRunFileManager
-from cg.services.run_devices.run_names.pacbio import PacbioRunNamesService
+from cg.services.run_devices.run_names.pacbio import PacbioRunDirectoryNamesService
 from cg.store.store import Store
 
 
@@ -36,8 +36,8 @@ def pac_bio_run_file_manager() -> PacBioRunFileManager:
 
 
 @pytest.fixture
-def pacbio_run_names_service(pac_bio_runs_dir: Path) -> PacbioRunNamesService:
-    return PacbioRunNamesService(run_directory=pac_bio_runs_dir.as_posix())
+def pacbio_run_names_service(pac_bio_runs_dir: Path) -> PacbioRunDirectoryNamesService:
+    return PacbioRunDirectoryNamesService(run_directory=pac_bio_runs_dir.as_posix())
 
 
 @pytest.fixture

diff --git a/tests/services/run_names/test_pacbio_run_names_service.py b/tests/services/run_names/test_pacbio_run_names_service.py
@@ -1,10 +1,10 @@
 from pathlib import Path
 
-from cg.services.run_devices.run_names.pacbio import PacbioRunNamesService
+from cg.services.run_devices.run_names.pacbio import PacbioRunDirectoryNamesService
 
 
 def test_pacbio_get_run_names(
-    pacbio_run_names_service: PacbioRunNamesService, pacbio_run_names: set
+    pacbio_run_names_service: PacbioRunDirectoryNamesService, pacbio_run_names: set
 ):
     """Test that getting PacBio run names works."""
     # GIVEN a PacBio run names service
@@ -18,7 +18,7 @@ def test_pacbio_get_run_names(
 
 def test_pacbio_get_run_names_empty(tmp_path: Path):
     # GIVEN a run directory with no run folders and a PacBio run names service
-    pacbio_run_names_service: PacbioRunNamesService = PacbioRunNamesService(
+    pacbio_run_names_service: PacbioRunDirectoryNamesService = PacbioRunDirectoryNamesService(
         run_directory=tmp_path.as_posix()
     )
 
@@ -35,7 +35,7 @@ def test_pacbio_get_run_names_with_files_return_emty(tmp_path: Path):
     run_dir.mkdir()
     Path(run_dir, "file1").touch()
     Path(run_dir, "file2").touch()
-    pacbio_run_names_service: PacbioRunNamesService = PacbioRunNamesService(
+    pacbio_run_names_service: PacbioRunDirectoryNamesService = PacbioRunDirectoryNamesService(
         run_directory=run_dir.as_posix()
     )
 
@@ -52,7 +52,7 @@ def test_pacbio_get_run_names_with_subfolders_return_empty(tmp_path: Path):
     run_dir.mkdir()
     subfolder = Path(run_dir, "subfolder")
     subfolder.mkdir()
-    pacbio_run_names_service: PacbioRunNamesService = PacbioRunNamesService(
+    pacbio_run_names_service: PacbioRunDirectoryNamesService = PacbioRunDirectoryNamesService(
         run_directory=run_dir.as_posix()
     )