feat(refactor): get_families_with_analyses (#3928)

### Change

- Refactor get_families_with_analyses

cg/store/crud/read.py

@@ -11,20 +11,12 @@
 from cg.constants.constants import CaseActions, CustomerId, PrepCategory, SampleType
 from cg.exc import CaseNotFoundError, CgError, OrderNotFoundError, SampleNotFoundError
 from cg.models.orders.constants import OrderType
-from cg.server.dto.samples.collaborator_samples_request import (
-    CollaboratorSamplesRequest,
-)
+from cg.server.dto.samples.collaborator_samples_request import CollaboratorSamplesRequest
 from cg.services.orders.order_service.models import OrderQueryParams
 from cg.store.base import BaseHandler
 from cg.store.exc import EntryNotFoundError
-from cg.store.filters.status_analysis_filters import (
-    AnalysisFilter,
-    apply_analysis_filter,
-)
-from cg.store.filters.status_application_filters import (
-    ApplicationFilter,
-    apply_application_filter,
-)
+from cg.store.filters.status_analysis_filters import AnalysisFilter, apply_analysis_filter
+from cg.store.filters.status_application_filters import ApplicationFilter, apply_application_filter
 from cg.store.filters.status_application_limitations_filters import (
     ApplicationLimitationsFilter,
     apply_application_limitations_filter,
@@ -34,23 +26,14 @@
     apply_application_versions_filter,
 )
 from cg.store.filters.status_bed_filters import BedFilter, apply_bed_filter
-from cg.store.filters.status_bed_version_filters import (
-    BedVersionFilter,
-    apply_bed_version_filter,
-)
+from cg.store.filters.status_bed_version_filters import BedVersionFilter, apply_bed_version_filter
 from cg.store.filters.status_case_filters import CaseFilter, apply_case_filter
-from cg.store.filters.status_case_sample_filters import (
-    CaseSampleFilter,
-    apply_case_sample_filter,
-)
+from cg.store.filters.status_case_sample_filters import CaseSampleFilter, apply_case_sample_filter
 from cg.store.filters.status_collaboration_filters import (
     CollaborationFilter,
     apply_collaboration_filter,
 )
-from cg.store.filters.status_customer_filters import (
-    CustomerFilter,
-    apply_customer_filter,
-)
+from cg.store.filters.status_customer_filters import CustomerFilter, apply_customer_filter
 from cg.store.filters.status_illumina_flow_cell_filters import (
     IlluminaFlowCellFilter,
     apply_illumina_flow_cell_filters,
@@ -69,10 +52,7 @@
     OrderTypeApplicationFilter,
     apply_order_type_application_filter,
 )
-from cg.store.filters.status_organism_filters import (
-    OrganismFilter,
-    apply_organism_filter,
-)
+from cg.store.filters.status_organism_filters import OrganismFilter, apply_organism_filter
 from cg.store.filters.status_pacbio_smrt_cell_filters import (
     PacBioSMRTCellFilter,
     apply_pac_bio_smrt_cell_filters,
@@ -1031,7 +1011,7 @@ def get_samples_to_sequence(self) -> list[Sample]:
         )
         return records.order_by(Sample.prepared_at).all()
 
-    def get_families_with_analyses(self) -> Query:
+    def get_cases_with_analyzes(self) -> Query:
         """Return all cases in the database with an analysis."""
         return self._get_outer_join_cases_with_analyses_query()
 
@@ -1062,7 +1042,7 @@ def get_cases_to_analyze(self, workflow: Workflow = None, limit: int = None) ->
             CaseFilter.FOR_ANALYSIS,
         ]
         cases = apply_case_filter(
-            cases=self.get_families_with_analyses(),
+            cases=self.get_cases_with_analyzes(),
             filter_functions=case_filter_functions,
             workflow=workflow,
         )