Add sample_concentration min/max (#2629) (minor)

### Added

- sample_concentration_minimum and sample_concentration_maximum to Application table.

alembic/versions/392e49db40fc_add_sample_concentration_min_max.py

@@ -0,0 +1,38 @@
+"""Add sample concentration min max
+
+Revision ID: 392e49db40fc
+Revises: db61c62d9bc0
+Create Date: 2023-10-25 09:50:16.779186
+
+"""
+import sqlalchemy as sa
+
+from alembic import op
+
+# revision identifiers, used by Alembic.
+revision = "392e49db40fc"
+down_revision = "db61c62d9bc0"
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    op.add_column(
+        table_name="application",
+        column=sa.Column(
+            "sample_concentration_minimum",
+            sa.DECIMAL(6, 2),
+        ),
+    )
+    op.add_column(
+        table_name="application",
+        column=sa.Column(
+            "sample_concentration_maximum",
+            sa.DECIMAL(6, 2),
+        ),
+    )
+
+
+def downgrade():
+    op.drop_column(table_name="application", column_name="sample_concentration_maximum")
+    op.drop_column(table_name="application", column_name="sample_concentration_minimum")

cg/server/admin.py

@@ -50,6 +50,26 @@ def is_external_application(unused1, unused2, model, unused3):
     return model.application_version.application.is_external if model.application_version else ""
 
 
+def view_sample_concentration_minimum(unused1, unused2, model, unused3):
+    """Column formatter to append unit"""
+    del unused1, unused2, unused3
+    return (
+        str(model.sample_concentration_minimum) + " ng/uL"
+        if model.sample_concentration_minimum
+        else None
+    )
+
+
+def view_sample_concentration_maximum(unused1, unused2, model, unused3):
+    """Column formatter to append unit"""
+    del unused1, unused2, unused3
+    return (
+        str(model.sample_concentration_maximum) + " ng/uL"
+        if model.sample_concentration_maximum
+        else None
+    )
+
+
 class ApplicationView(BaseView):
     """Admin view for Model.Application"""
 
@@ -78,6 +98,10 @@ class ApplicationView(BaseView):
         "updated_at",
         "category",
     ]
+    column_formatters = {
+        "sample_concentration_minimum": view_sample_concentration_minimum,
+        "sample_concentration_maximum": view_sample_concentration_maximum,
+    }
     column_filters = ["prep_category", "is_accredited"]
     column_searchable_list = ["tag", "prep_category"]
     form_excluded_columns = ["category", "versions"]

cg/store/models.py

@@ -105,6 +105,8 @@ class Application(Model):
     sample_amount = Column(types.Integer)
     sample_volume = Column(types.Text)
     sample_concentration = Column(types.Text)
+    sample_concentration_minimum = Column(types.DECIMAL)
+    sample_concentration_maximum = Column(types.DECIMAL)
     priority_processing = Column(types.Boolean, default=False)
     details = Column(types.Text)
     limitations = Column(types.Text)