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Original file line number | Diff line number | Diff line change |
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@@ -16,13 +16,6 @@ | |
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from cg.apps.crunchy import CrunchyAPI | ||
from cg.apps.demultiplex.demultiplex_api import DemultiplexingAPI | ||
from cg.apps.demultiplex.sample_sheet.sample_models import ( | ||
FlowCellSampleBcl2Fastq, | ||
FlowCellSampleBCLConvert, | ||
) | ||
from cg.apps.demultiplex.sample_sheet.sample_sheet_creator import ( | ||
SampleSheetCreatorBCLConvert, | ||
) | ||
from cg.apps.downsample.downsample import DownsampleAPI | ||
from cg.apps.gens import GensAPI | ||
from cg.apps.gt import GenotypeAPI | ||
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@@ -393,7 +386,8 @@ def demultiplex_configs( | |
"demultiplex": {"slurm": {"account": "test", "mail_user": "[email protected]"}}, | ||
} | ||
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@pytest.fixture | ||
def real_crunchy_api(crunchy_config) -> CrunchyAPI: | ||
return CrunchyAPI(crunchy_config) | ||
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@@ -2287,7 +2281,6 @@ def rnafusion_context( | |
case_id_not_enough_reads: str, | ||
sample_id_not_enough_reads: str, | ||
total_sequenced_reads_not_pass: int, | ||
timestamp_yesterday: datetime, | ||
) -> CGConfig: | ||
"""context to use in cli""" | ||
cg_context.housekeeper_api_ = nf_analysis_housekeeper | ||
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