(Add new devices) Add pacbio order submitter (#3743) (patch)

### Added

- Pacbio order submitter
- Pacbio order submitter added to the registry

cg/services/orders/submitters/order_submitter_registry.py

@@ -1,35 +1,56 @@
 from cg.apps.lims import LimsAPI
 from cg.models.orders.constants import OrderType
 from cg.services.orders.order_lims_service.order_lims_service import OrderLimsService
-from cg.services.orders.store_order_services.store_fastq_order_service import StoreFastqOrderService
-from cg.services.orders.store_order_services.store_case_order import StoreCaseOrderService
+from cg.services.orders.store_order_services.store_case_order import (
+    StoreCaseOrderService,
+)
+from cg.services.orders.store_order_services.store_fastq_order_service import (
+    StoreFastqOrderService,
+)
 from cg.services.orders.store_order_services.store_metagenome_order import (
     StoreMetagenomeOrderService,
 )
 from cg.services.orders.store_order_services.store_microbial_fastq_order_service import (
     StoreMicrobialFastqOrderService,
 )
-from cg.services.orders.store_order_services.store_microbial_order import StoreMicrobialOrderService
-from cg.services.orders.store_order_services.store_pool_order import StorePoolOrderService
-from cg.services.orders.submitters.fastq_order_submitter import FastqOrderSubmitter
+from cg.services.orders.store_order_services.store_microbial_order import (
+    StoreMicrobialOrderService,
+)
+from cg.services.orders.store_order_services.store_pacbio_order_service import (
+    StorePacBioOrderService,
+)
+from cg.services.orders.store_order_services.store_pool_order import (
+    StorePoolOrderService,
+)
 from cg.services.orders.submitters.case_order_submitter import CaseOrderSubmitter
-from cg.services.orders.submitters.metagenome_order_submitter import MetagenomeOrderSubmitter
-from cg.services.orders.submitters.microbial_order_submitter import MicrobialOrderSubmitter
+from cg.services.orders.submitters.fastq_order_submitter import FastqOrderSubmitter
+from cg.services.orders.submitters.metagenome_order_submitter import (
+    MetagenomeOrderSubmitter,
+)
+from cg.services.orders.submitters.microbial_order_submitter import (
+    MicrobialOrderSubmitter,
+)
 from cg.services.orders.submitters.order_submitter import OrderSubmitter
+from cg.services.orders.submitters.pacbio_order_submitter import PacbioOrderSubmitter
 from cg.services.orders.submitters.pool_order_submitter import PoolOrderSubmitter
-from cg.services.orders.validate_order_services.validate_fastq_order import (
-    ValidateFastqOrderService,
-)
 from cg.services.orders.validate_order_services.validate_case_order import (
     ValidateCaseOrderService,
 )
+from cg.services.orders.validate_order_services.validate_fastq_order import (
+    ValidateFastqOrderService,
+)
 from cg.services.orders.validate_order_services.validate_metagenome_order import (
     ValidateMetagenomeOrderService,
 )
 from cg.services.orders.validate_order_services.validate_microbial_order import (
     ValidateMicrobialOrderService,
 )
-from cg.services.orders.validate_order_services.validate_pool_order import ValidatePoolOrderService
+from cg.services.orders.validate_order_services.validate_pacbio_order import (
+    ValidatePacbioOrderService,
+)
+from cg.services.orders.validate_order_services.validate_pool_order import (
+    ValidatePoolOrderService,
+)
 from cg.store.store import Store
 
 
@@ -107,6 +128,12 @@ def get_order_submitter(self, order_type: OrderType) -> OrderSubmitter:
         StoreCaseOrderService,
         CaseOrderSubmitter,
     ),
+    OrderType.PACBIO_LONG_READ: (
+        OrderLimsService,
+        ValidatePacbioOrderService,
+        StorePacBioOrderService,
+        PacbioOrderSubmitter,
+    ),
     OrderType.RML: (
         OrderLimsService,
         ValidatePoolOrderService,

cg/services/orders/submitters/pacbio_order_submitter.py

@@ -0,0 +1,26 @@
+from cg.models.orders.order import OrderIn
+from cg.services.orders.store_order_services.store_pacbio_order_service import (
+    StorePacBioOrderService,
+)
+from cg.services.orders.submitters.order_submitter import OrderSubmitter
+from cg.services.orders.validate_order_services.validate_pacbio_order import (
+    ValidatePacbioOrderService,
+)
+
+
+class PacbioOrderSubmitter(OrderSubmitter):
+    """Submitter for Pacbio orders."""
+
+    def __init__(
+        self,
+        order_validation_service: ValidatePacbioOrderService,
+        order_store_service: StorePacBioOrderService,
+    ):
+        self.order_validation_service = order_validation_service
+        self.order_store_service = order_store_service
+
+    def submit_order(self, order_in: OrderIn) -> dict:
+        """Submit a fastq order."""
+        self.order_validation_service.validate_order(order_in)
+        result: dict = self.order_store_service.store_order(order_in)
+        return result