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Add plots for wastewater concentrations #382
Add plots for wastewater concentrations #382
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…-generate-plots-for-predictedobserved-site-level-wastewater-concentration
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #382 +/- ##
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- Coverage 30.58% 30.16% -0.43%
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Files 26 26
Lines 1942 1986 +44
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+ Hits 594 599 +5
- Misses 1348 1387 +39
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…e-level-wastewater-concentration
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…e-level-wastewater-concentration
…e-level-wastewater-concentration
…tewater-concentration' of https://github.com/CDCgov/pyrenew-hew into 370-generate-plots-for-predictedobserved-site-level-wastewater-concentration
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Thanks @sbidari! Some changes requested.
Co-authored-by: Damon Bayer <[email protected]>
…tewater-concentration' of https://github.com/CDCgov/pyrenew-hew into 370-generate-plots-for-predictedobserved-site-level-wastewater-concentration
…e-level-wastewater-concentration
…tewater-concentration' of https://github.com/CDCgov/pyrenew-hew into 370-generate-plots-for-predictedobserved-site-level-wastewater-concentration
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Adds plots of wastewater concentration to the postprocessing steps.
Summary of changes:
lab_site_index
ordered by population sizeprocess_state_forecast.R
,make_forecast_figure.R
andplot_and_save_state_forecast.R
to handle new variableslab_site_index
topipelines/prep_data.py
pipelines/score_forecast.R
andpipelines/timeseries_forecast.R
to handlelab_site_index
column appropriately