Fix failing CI by applying epipredict patch (#351)

* Add epipredict and epiprocess to DESCRIPTION

* Simplify end to end test workflow

.github/workflows/pipeline-run-check.yaml

@@ -40,11 +40,8 @@ jobs:
         uses: r-lib/actions/setup-r-dependencies@v2
         with:
           working-directory: hewr
-      - name: "Install extra pkgs"
-        run: |
-            pak::local_install("hewr", ask = FALSE)
-            pak::pkg_install("cmu-delphi/epipredict@main", ask = FALSE)
-            pak::pkg_install("cmu-delphi/epiprocess@main", ask = FALSE)
+      - name: "Install hewr"
+        run: pak::local_install("hewr", ask = FALSE)
         shell: Rscript {0}
       - name: "Run pipeline"
         run: poetry run bash pipelines/tests/test_end_to_end.sh pipelines/tests

hewr/DESCRIPTION

@@ -42,9 +42,13 @@ Imports:
     tidybayes,
     tidyr,
     tidyselect,
+    epipredict,
+    epiprocess,
     urca
 Remotes:
-    https://github.com/cdcgov/forecasttools
+    https://github.com/cdcgov/forecasttools,
+    https://github.com/cmu-delphi/epipredict,
+    https://github.com/cmu-delphi/epiprocess
 Suggests:
     checkmate,
     rcmdcheck,