Schema check on startup

[cbrinson-rise8]

Description

On application startup, verify that database tables match the ORM.

Related Issues

closes #143

Additional Notes

Acceptance Criteria

• A new function that verifies the tables called from the create_sessionmaker function
• Tests to show that it works (may need to programmatically alter the tables in the test cases to show this)

Details / Tasks

On application startup, the database tables are optionally created. That is, they are only created if they don't exist. It's possible thought that the columns don't align to the ORM state. Enhance the startup procedure to verify that the database columns, name and type, match those specified of the ORM, if there is a mismatch raise a SQLAlchemyError with mismatch details.

Background / Context

Take a look at sqlalchemy.inspect for getting table information.

<--------------------- REMOVE THE LINES BELOW BEFORE MERGING --------------------->

Checklist

Please review and complete the following checklist before submitting your pull request:

• I have ensured that the pull request is of a manageable size, allowing it to be reviewed within a single session.
• I have reviewed my changes to ensure they are clear, concise, and well-documented.
• I have updated the documentation, if applicable.
• I have added or updated test cases to cover my changes, if applicable.
• I have minimized the number of reviewers to include only those essential for the review.

Checklist for Reviewers

Please review and complete the following checklist during the review process:

• The code follows best practices and conventions.
• The changes implement the desired functionality or fix the reported issue.
• The tests cover the new changes and pass successfully.
• Any potential edge cases or error scenarios have been considered.

[codecov]

Codecov Report

Attention: Patch coverage is 96.29630% with 1 line in your changes missing coverage. Please review.

Project coverage is 97.19%. Comparing base (b1cdc7d) to head (322400a).

Files with missing lines	Patch %	Lines
src/recordlinker/database/__init__.py	96.29%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #168      +/-   ##
==========================================
- Coverage   97.21%   97.19%   -0.03%     
==========================================
  Files          30       30              
  Lines        1328     1354      +26     
==========================================
+ Hits         1291     1316      +25     
- Misses         37       38       +1     

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[ericbuckley]

@cbrinson-rise8 it looks like the smoke tests are failing, does the new verify function work in the docker compose environment? I'm wondering if we need to somehow check this with all 4 databases?