Schema check on startup #326
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| name: check smoke tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| smoke_tests: | |
| runs-on: ubuntu-latest | |
| # TODO: modify smoke tests to cover multiple db types | |
| services: | |
| db: | |
| image: postgres:17 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: pw | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| # - name: Prepare SQLite Database | |
| # run: | | |
| # # Ensure the SQLite database file exists | |
| # touch test.db | |
| - name: Build RecordLinker Docker Image | |
| run: | | |
| docker build -t rl-service-image . | |
| - name: Start RecordLinker Service and Run Smoke Tests | |
| run: | | |
| # Start Record Linker Service with SQLite | |
| docker run -d --name rl-service \ | |
| --network="host" \ | |
| -e DB_URI="postgresql+psycopg2://postgres:pw@localhost:5432/postgres" \ | |
| -p 8080:8080 \ | |
| rl-service-image | |
| # Wait for the RL Service to be healthy | |
| TRIES=5 | |
| COUNT=0 | |
| until curl -s http://localhost:8080/ | grep "OK"; do | |
| echo "Waiting for RL Service to become healthy... Attempt $((COUNT+1)) of $TRIES" | |
| sleep 5 | |
| COUNT=$((COUNT+1)) | |
| if [ "$COUNT" -ge "$TRIES" ]; then | |
| echo "RL Service did not become healthy in time. Fetching container logs..." | |
| docker logs rl-service | |
| exit 1 | |
| fi | |
| done | |
| # Run smoke tests and print the response | |
| JSON_BODY_1='{"record": {"birth_date": "2053-11-07", "sex": "M", "identifiers":[{"value": "123456789", "type": "MR"}], "name":[{"family":"Shepard", "given":["John"]}]}}' | |
| JSON_BODY_2='{"algorithm": "dibbs-enhanced", "record": {"birth_date": "2000-12-06", "sex": "M", "identifiers":[{"value": "9876543210", "type": "MR"}], "name":[{"family":"Smith", "given":["William"]}]}}' | |
| #basic tests | |
| RESPONSE_1=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_1" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_1" | |
| echo "$RESPONSE_1" | jq -e '.prediction == "no_match"' | |
| PERSON_REFERENCE_ID=$(echo "$RESPONSE_1" | jq -r '.person_reference_id') | |
| RESPONSE_2=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_1" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_2" | |
| echo "$RESPONSE_2" | jq -e '.prediction == "match"' | |
| echo "$RESPONSE_2" | jq -e --arg id "$PERSON_REFERENCE_ID" '.person_reference_id == $id' | |
| #enhanced tests | |
| RESPONSE_3=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_2" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_3" | |
| echo "$RESPONSE_3" | jq -e '.prediction == "no_match"' | |
| PERSON_REFERENCE_ID=$(echo "$RESPONSE_3" | jq -r '.person_reference_id') | |
| RESPONSE_4=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_2" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_4" | |
| echo "$RESPONSE_4" | jq -e '.prediction == "match"' | |
| echo "$RESPONSE_4" | jq -e --arg id "$PERSON_REFERENCE_ID" '.person_reference_id == $id' | |
| #invalid tests | |
| RESPONSE_5=$(curl -s -X POST http://localhost:8080/link \ | |
| -d '{"algorithm": "invalid", "record": {}}' \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_5" | |
| echo "$RESPONSE_5" | grep -q "No algorithm found" |