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emanuelecavalleri authored Feb 4, 2025
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## A LinkML Schema for Representing Relationships Between Genes and Biological Processes

Suppose we want to create a LinkML schema that models interactions between genes and biological processes. A bio-curator may define such a schema to represent and standardize biological knowledge from heterogeneous sources. Additionally, this schema can act as a meta-model for guiding a LLM in the targeted extraction of entities and relationships involving genes and biological processes from scientific texts.
Suppose we want to create a LinkML schema that models interactions between genes and biological processes. A bio-curator may define such a schema to represent and standardize biological knowledge from heterogeneous sources. Additionally, this schema can act as a meta-model to be translated in targeted prompts for guiding a LLM in the extraction of entities and relationships involving genes and biological processes from scientific texts.

We begin by specifying (1) a schema name, and (2) a schema description. Moreover, we can include in the main canvas a new class named "Gene" by clicking on the button (3).

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