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@AnacletoLAB

AnacletoLab

Computational Biology and Bioinformatics Lab - Dept. of Computer Science - UNIMI

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  1. grape grape Public

    🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations

    Jupyter Notebook 572 39

  2. ensmallen ensmallen Public

    🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.

    Python 40 13

  3. RNA-KG RNA-KG Public

    Jupyter Notebook 21 1

  4. sHAM sHAM Public

    Compact representations of convolutional neural networks via weight pruning and quantization

    Python 10 3

  5. parSMURF parSMURF Public

    High Performance Computing imbalance-aware machine learning tool for the genome-wide detection of pathogenic variants

    Python 7 2

  6. epigenomic_dataset epigenomic_dataset Public

    Python package wrapping ENCODE epigenomic data for a number of reference cell lines.

    Jupyter Notebook 6 1

Repositories

Showing 10 of 24 repositories
  • AnacletoLAB/RNA-KG_homogeneous_emb_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 14, 2025
  • miRInter-Trans Public

    A transformer-based model to predict micro RNA interactions

    AnacletoLAB/miRInter-Trans’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Mar 26, 2025
  • ncRNA-CUPID Public

    ncRNA-CUPID, Computational Understanding of Pairwise Interactions in ncRNA Data (matchmaking for ncRNAs)

    AnacletoLAB/ncRNA-CUPID’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Mar 20, 2025
  • missSNF Public Forked from GliozzoJ/missSNF

    R implementation of the miss-SNF algorithm.

    AnacletoLAB/missSNF’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Feb 28, 2025
  • schemalink-docs Public

    Source code for the documentation website of the Schemalink project

    AnacletoLAB/schemalink-docs’s past year of commit activity
    Ruby 0 CC0-1.0 0 0 1 Updated Feb 13, 2025
  • RNA-KG Public
    AnacletoLAB/RNA-KG’s past year of commit activity
    Jupyter Notebook 21 Apache-2.0 1 0 0 Updated Nov 12, 2024
  • Finenzyme Public

    Language modeling for enzyme sequences

    AnacletoLAB/Finenzyme’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Sep 18, 2024
  • hetnode2vec_ensmallen Public

    This repository provides an implementation to add Het-node2vec as a library to Grape.

    AnacletoLAB/hetnode2vec_ensmallen’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 16, 2024
  • ensmallen Public

    🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.

    AnacletoLAB/ensmallen’s past year of commit activity
    Python 40 MIT 13 11 1 Updated Aug 5, 2024
  • DR_omics_integration Public

    code and material to run all the experiments for dimensionality reduction guided by block analysis, data integration, OS prediction

    AnacletoLAB/DR_omics_integration’s past year of commit activity
    R 0 0 0 0 Updated Jul 3, 2024

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