Skip to content

Commit

Permalink
Update model list
Browse files Browse the repository at this point in the history
  • Loading branch information
C-Achard committed Sep 27, 2023
1 parent 808dde3 commit 2f0409e
Show file tree
Hide file tree
Showing 2 changed files with 7 additions and 7 deletions.
4 changes: 2 additions & 2 deletions docs/source/guides/inference_module_guide.rst
Original file line number Diff line number Diff line change
Expand Up @@ -7,9 +7,9 @@ This module allows you to use pre-trained segmentation algorithms (written in Py
to automatically label cells.

.. important::
Currently, only inference on **3D volumes is supported**. If using folders, your images and labels folders
Currently, only inference on **3D volumes is supported**. If running on folders, your images and labels folders
should both contain a set of **3D image files**, either **.tif** or **.tiff**.
Otherwise you may run inference on layers in napari.
Otherwise you may run inference on layers in napari. Stacks of 2D files can be loaded as 3D volumes in napari.

Currently, the following pre-trained models are available :

Expand Down
10 changes: 5 additions & 5 deletions docs/source/guides/training_module_guide.rst
Original file line number Diff line number Diff line change
Expand Up @@ -36,9 +36,9 @@ WNet `WNet, A Deep Model for Fully Unsupervised Image Segmentation`_
.. _WNet, A Deep Model for Fully Unsupervised Image Segmentation: https://arxiv.org/abs/1711.08506

.. important::
| The machine learning models used by this program require all images of a dataset to be of the same size.
| Please ensure that all the images you are loading are of the **same size**, or to use the **"extract patches" (in augmentation tab)** with an appropriately small size to ensure all images being used by the model are of a workable size.
| If you need to fragment a large file into cubes, please use the Fragment utility in :ref:`utils_module_guide`.
The machine learning models used by this program require all images of a dataset to be of the same size.
Please ensure that all the images you are loading are of the **same size**, or to use the **"extract patches" (in augmentation tab)** with an appropriately small size to ensure all images being used by the model are of a workable size.
If you need to fragment a large file into cubes, please use the Fragment utility in :ref:`utils_module_guide`.

The training module is comprised of several tabs :

Expand Down Expand Up @@ -67,8 +67,8 @@ ___________________
* Whether to use images "as is" (**requires all images to be of the same size and cubic**) or extract patches

.. important::
| **All image sizes used should be as close to a power of two as possible, or equal to a power of two.**
| Images are automatically padded; a 64 pixels cube will be used as is, but a 65 pixel cube will be padded up to 128 pixels, resulting in much higher memory use.
**All image sizes used should be as close to a power of two as possible, or equal to a power of two.**
Images are automatically padded; a 64 pixels cube will be used as is, but a 65 pixel cube will be padded up to 128 pixels, resulting in much higher memory use.

* If you're extracting patches :

Expand Down

0 comments on commit 2f0409e

Please sign in to comment.