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MHC-I genotyping on Split BAMs #4

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riasc opened this issue Jan 14, 2024 · 1 comment
Open

MHC-I genotyping on Split BAMs #4

riasc opened this issue Jan 14, 2024 · 1 comment

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@riasc
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riasc commented Jan 14, 2024

BAMfiles probably need to be QNAME sorted (rather than coordinate sorted) when splitting them
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riasc commented Jun 21, 2024

WARNING 2024-06-20 22:56:20 SplitSamByNumberOfReads Splitting a coordinate sorted bam may result in invalid bams that do not always contain each read's mate in the same bam.

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