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LRSDAY v1.1.0
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@yjx1217 yjx1217 released this 11 Jul 13:37
· 25 commits to master since this release
v1.1.0
819b84e

[1.1.0] - 2018-07-11

Added

  • This change log file: Changelog.md
  • Support for customized parameter settings for Canu.
  • Support for alternative assemblers: Flye and smartdenovo.
  • The script subsampling_seqeunces.pl for downsampling input reads.
  • Support for the report of exact numbers of SNP and INDEL corrections made based on the Illumina data.

Changed

  • Better resource management for the Illumina-based polishing step.
  • Better robustness for the reference-based scaffolding step.
  • Better performance and robustness for the mitochondrial genome assembly improvement step.
  • Better robustness for the TE annotation step.
  • Better robustness for the reference-based gene orthology identification step.
  • Software version or downloading URL updates for a number of dependencies.
  • Preparation for future incorporation of long-read-based polishing step.

Fixed

  • A bug in the script identify_contigs_for_RefChr_by_mummer.pl that ignores user-specified options.
  • Typos in the manual.
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