Skip to content

Releases: yatisht/usher

v0.6.4

22 Nov 04:29
@yatisht yatisht
v0.6.4
e0df3f5
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
v0.6.4 Pre-release
Pre-release

Contributors

AngieHinrichs, russcd, and 2 other contributors
Assets 2
Loading

v0.6.3

01 Nov 17:44
@yatisht yatisht
v0.6.3
ac727f5
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v0.6.3 Pre-release
Pre-release
  • Several minor bug fixes (#329 – #355)
Assets 2
Loading

v0.6.2

13 Jan 18:11
@yatisht yatisht
v0.6.2
92d0d37
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v0.6.2 Pre-release
Pre-release
Assets 2
Loading

v0.6.1

08 Dec 23:41
@yatisht yatisht
v0.6.1
35711bc
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v0.6.1 Pre-release
Pre-release
  • Minor bug fixes for Pangolin update #304 – #307
Assets 2
Loading

v0.6.0

29 Oct 22:35
@yatisht yatisht
v0.6.0
460d9e2
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v0.6.0 Pre-release
Pre-release
  • Releasing new programs usher-sampled and ripples-fast
  • Many bug fixes and feature additions in PRs #251 – #295
Assets 2
Loading

v0.5.6

23 Jun 18:40
@yatisht yatisht
v0.5.6
994f7d6
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v0.5.6 Pre-release
Pre-release
  • Added simulation scripts for RIPPLES (#250).
Assets 2
Loading

v0.5.5

22 Jun 13:31
@yatisht yatisht
v0.5.5
7c1d951
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v0.5.5 Pre-release
Pre-release
  • Updated RIPPLES workflow (#249).
  • Added matOptimize publication details.
Assets 2
Loading

v0.5.4

25 Apr 22:27
@yatisht yatisht
v0.5.4
2ebfe70
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v0.5.4 Pre-release
Pre-release
  • Keep protobuf generation in sync (#226)
  • Radius doubling on the final round of optimization in matOpimize (#223)
  • Fix indexing bug that can cause overspecific clade assignment (#234)
  • bugfix to metadata reader
  • Some additional bugfixes (#229)
Assets 2
Loading

v0.5.3

12 Mar 20:40
@yatisht yatisht
v0.5.3
728b739
Compare
Choose a tag to compare
v0.5.3 Pre-release
Pre-release
  • New -M option in matUtils mask to forcibly move nodes within the tree (#220)
  • New -U option in matUtils extract to select ALL samples under the MRCA of the current sample set (#220)
  • Codon change string provided in matUtils summary translation output (#220)
  • New --closest-relatives option added to matUtils extract (#218)
  • New --include-nt option added to matUtils extract --write-taxodium (#216)
  • Fixed vcf importer in matOptimize (#208)
  • Modified clade assignment logic
Assets 2
Loading

v0.5.2

12 Jan 01:27
@yatisht yatisht
v0.5.2
5e55202
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v0.5.2 Pre-release
Pre-release
  • Faster ripples as ripples-fast (#200 and #202).
  • Refactor and clean up of matUtils introduce for the preprint. Whitelist samples that would otherwise be pruned or not included, added to matUtils extract (#198).
  • Bug fix in usher for printing parsimony scores using -p flag.
Assets 2
Loading