Bulk tag upload 1263

What's Changed

• Graceful handling of files from RCSB PDB (issue 1282) by @kaliif in #567
• Attempt to reduce pop-up "flicker" (1403) by @alanbchristie in #569
• First reference PDB from assemblies.yaml available in API by @kaliif in #571
• Added 'hidden' property to viewer.Tag model by @kaliif in #573
• Better user/proposal cache by @alanbchristie in #576
• Fix static ressources not being loaded by @kaliif in #578
• Revert "Fix static ressources not being loaded" by @kaliif in #579
• Allow uploading fully versioned data (issue 1311) by @kaliif in #580
• Only non-superseded sites available from the api (issue 1311) by @kaliif in #583
• build(deps): bump django from 3.2.24 to 3.2.25 by @dependabot in #564
• build(deps): bump pillow from 10.2.0 to 10.3.0 by @dependabot in #568
• build(deps): bump idna from 3.6 to 3.7 by @dependabot in #572
• Better check for already uploaded data by @kaliif in #585
• build(deps-dev): bump black from 23.12.0 to 24.3.0 by @dependabot in #584
• build(deps): bump tqdm from 4.66.1 to 4.66.3 by @dependabot in #581
• Backend part of poses feature (issue 1392) by @kaliif in #586
• fix: merge conflicting migrations by @kaliif in #587
• Adds basic metrics by @alanbchristie in #588
• Attempt to add prometheus to DB by @alanbchristie in #589
• Add custom (security) metrics by @alanbchristie in #593
• Fixed connection retry metric by @alanbchristie in #594
• Traffic lights queries to backend (issue 1205) by @kaliif in #595
• fix: remove auto-generating pose tags by @kaliif in #596
• Fix for tunnel connection failure metrics by @alanbchristie in #597
• Adjust metrics (tunnels and cache) by @alanbchristie in #598
• fix: service test functions now scheduled correctly by @kaliif in #599
• Changed canon site autogenerated tag name (issue 1358) by @kaliif in #600
• feat: filename attribute to RHS download serializer (issue 1393) by @kaliif in #601
• fix: update observation's longcode template by @kaliif in #602
• Adjust logging for cache debug by @alanbchristie in #603
• Fix connection failure logic by @alanbchristie in #604
• Reduced security logging by @alanbchristie in #605
• feat: add management commands to save and restore curated tags by @kaliif in #606
• Set ConformerSites and CrystalformSites tags to hidden by default (issue 1460) by @kaliif in #608
• Incermental rhs upload (issue 1394) by @kaliif in #610
• Initial 'security' changes - Target PATCH now "locked down" by @alanbchristie in #612
• Update automatic tag generation (issue1466) by @kaliif in #613
• Fix querysets in target_loader.py by @kaliif in #617
• Incermental rhs upload - remove explicit versioning (issue 1394) by @kaliif in #618
• Add additional ccp4 files to download (issue 1448) by @kaliif in #622
• Copies Target proposals to new (RHS) Compounds by @alanbchristie in #629
• Updates to tag generation and metadata.csv in downloads (issue1482) by @kaliif in #630
• Fix typo accessing Target projects by @alanbchristie in #632
• Add support for target_warning_message context variable by @alanbchristie in #634
• API authentication and security changes by @alanbchristie in #635
• Adds variable to context by @alanbchristie in #636
• Add note and display template and its context by @alanbchristie in #637
• fix: fixed tag loading management command by @kaliif in #638
• fix: fixed tag loader management command some more by @kaliif in #639
• Add support for RESTRICTED_TAS_USERS by @alanbchristie in #640
• Better handling of project path AttributeError by @alanbchristie in #641
• Protect permissions from bad objects by @alanbchristie in #642
• Fix merge issue by @alanbchristie in #643
• Relaxes authentication for SessionProject by @alanbchristie in #644
• Now displays object class name by @alanbchristie in #645
• Add additional context to the API error by @alanbchristie in #646
• Relaxed auth for SessionActionsView & SnapshotActionsView by @alanbchristie in #647
• Relax auth on SessionProjectTag & SiteObservationTag by @alanbchristie in #648
• Can now download public RHS without being logged in by @alanbchristie in #649
• Fix second upload file paths (issue 1492) by @kaliif in #650
• fix: log compound names when alignment is not found (issue 1495) by @kaliif in #651
• Removed target name from canon site and conformer site tags (issue 1496) by @kaliif in #652
• Sort canon sites by number of site observations (issue1498) by @kaliif in #653
• Shorter versions of crystalform sites-, conformer sites- and canon sites tags (issue 1496) by @kaliif in #654
• Updated both short- and longcode (issue 1499) by @kaliif in #655
• Second upload working (issue 1492) by @kaliif in #656
• Fixes a bug in target loader's create_objects func by @kaliif in #660
• Updated tag name format (issue 1508) by @kaliif in #661
• fix: restore pose column to metadata.csv by @kaliif in #663
• Bulk tag loader (issue 1263) by @kaliif in #666
• Fixed null condition in metadata loader (issue 1263) by @kaliif in #668
• Added source files to database and API (issue 1497) by @kaliif in #669
• Source paths to experiment model (issue 1497) by @kaliif in #670
• Bulk tag loader changes (1263) by @alanbchristie in #671

Full Changelog: 2024.09.2...2024.09.3