Merge pull request #680 from xchem/m2ms-1514-target-data-migration #368
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| --- | |
| name: build staging | |
| # Actions that take place after every commit the 'staging' branch. | |
| # Here every commit is built, tagged (as 'latest' or with the tag) and tested. | |
| # We ignore any production-like tags in this workflow. | |
| # | |
| # If a DOCKERHUB_USERNAME secret is defined the image is pushed. | |
| # | |
| # Actions also run on a schedule - the container is built, tested, | |
| # pushed and deployed (if the relevant secrets are set) based on | |
| # a defined schedule. | |
| # --------------- | |
| # Control secrets | |
| # --------------- | |
| # | |
| # At the GitHub 'organisation' or 'project' level you are expected to | |
| # have the following GitHub 'Repository Secrets' defined | |
| # (i.e. via 'Settings -> Secrets'): - | |
| # | |
| # BE_NAMESPACE optional - default xchem | |
| # FE_IMAGE_TAG optional - default latest | |
| # FE_NAMESPACE optional - default xchem | |
| # STACK_BRANCH optional - default master | |
| # STACK_GITHUB_NAMESPACE optional - default xchem | |
| # STACK_NAMESPACE optional - default xchem | |
| # | |
| # DOCKERHUB_USERNAME optional | |
| # DOCKERHUB_TOKEN optional - required if DOCKERHUB_USERNAME | |
| # | |
| # TRIGGER_DOWNSTREAM optional - set to 'yes' | |
| # to trigger downstream projects | |
| # | |
| # STACK_USER optional - set if triggering | |
| # STACK_USER_TOKEN optional - set if triggering | |
| # | |
| # ----------- | |
| # Environment (GitHub Environments) | |
| # ----------- | |
| # | |
| # (none) | |
| on: | |
| push: | |
| branches: | |
| - 'staging' | |
| tags-ignore: | |
| # Ignore any production-grade tags (i.e. "2022.1" or "1.0.0"), | |
| # they're reserved for the production branch. Here | |
| # we expect a non-production tag, i.e. "2022.1-rc.1" or "1.0.0-rc.1" | |
| - '[0-9]+.[0-9]+' | |
| - '[0-9]+.[0-9]+.[0-9]+' | |
| schedule: | |
| # Build every Sunday (0) at 4:30pm | |
| - cron: '30 16 * * 0' | |
| env: | |
| # The following 'defaults' are used in the 'Initialise workflow variables' step, | |
| # which creates 'outputs' for use in steps and jobs that follow it. | |
| # The values set here are used unless a matching secret is found. | |
| # Secrets are the way users dynamically control the behaviour of this Action. | |
| # | |
| # For Jobs conditional on the presence of a secret see this Gist... | |
| # https://gist.github.com/jonico/24ffebee6d2fa2e679389fac8aef50a3 | |
| BE_NAMESPACE: xchem | |
| FE_IMAGE_TAG: latest | |
| FE_NAMESPACE: xchem | |
| STACK_BRANCH: master | |
| STACK_GITHUB_NAMESPACE: xchem | |
| STACK_NAMESPACE: xchem | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| push: ${{ steps.vars.outputs.push }} | |
| tag: ${{ steps.vars.outputs.tag }} | |
| trigger: ${{ steps.vars.outputs.trigger }} | |
| steps: | |
| - name: Inject slug/short variables | |
| uses: rlespinasse/github-slug-action@v4 | |
| - name: Initialise workflow variables | |
| id: vars | |
| env: | |
| DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }} | |
| TRIGGER_DOWNSTREAM: ${{ secrets.TRIGGER_DOWNSTREAM }} | |
| run: | | |
| # BE_NAMESPACE | |
| BE_NAMESPACE="${{ env.BE_NAMESPACE }}" | |
| if [ -n "${{ secrets.BE_NAMESPACE }}" ]; then BE_NAMESPACE="${{ secrets.BE_NAMESPACE }}"; fi | |
| echo BE_NAMESPACE=${BE_NAMESPACE} | |
| echo "BE_NAMESPACE=${BE_NAMESPACE}" >> $GITHUB_OUTPUT | |
| # FE_IMAGE_TAG | |
| FE_IMAGE_TAG="${{ env.FE_IMAGE_TAG }}" | |
| if [ -n "${{ secrets.FE_IMAGE_TAG }}" ]; then FE_IMAGE_TAG="${{ secrets.FE_IMAGE_TAG }}"; fi | |
| echo FE_IMAGE_TAG=${FE_IMAGE_TAG} | |
| echo "FE_IMAGE_TAG=${FE_IMAGE_TAG}" >> $GITHUB_OUTPUT | |
| # FE_NAMESPACE | |
| FE_NAMESPACE="${{ env.FE_NAMESPACE }}" | |
| if [ -n "${{ secrets.FE_NAMESPACE }}" ]; then FE_NAMESPACE="${{ secrets.FE_NAMESPACE }}"; fi | |
| echo FE_NAMESPACE=${FE_NAMESPACE} | |
| echo "FE_NAMESPACE=${FE_NAMESPACE}" >> $GITHUB_OUTPUT | |
| # STACK_BRANCH | |
| STACK_BRANCH="${{ env.STACK_BRANCH }}" | |
| if [ -n "${{ secrets.STACK_BRANCH }}" ]; then STACK_BRANCH="${{ secrets.STACK_BRANCH }}"; fi | |
| echo STACK_BRANCH=${STACK_BRANCH} | |
| echo "STACK_BRANCH=${STACK_BRANCH}" >> $GITHUB_OUTPUT | |
| # STACK_GITHUB_NAMESPACE | |
| STACK_GITHUB_NAMESPACE="${{ env.STACK_GITHUB_NAMESPACE }}" | |
| if [ -n "${{ secrets.STACK_GITHUB_NAMESPACE }}" ]; then STACK_GITHUB_NAMESPACE="${{ secrets.STACK_GITHUB_NAMESPACE }}"; fi | |
| echo STACK_GITHUB_NAMESPACE=${STACK_GITHUB_NAMESPACE} | |
| echo "STACK_GITHUB_NAMESPACE=${STACK_GITHUB_NAMESPACE}" >> $GITHUB_OUTPUT | |
| # STACK_NAMESPACE | |
| STACK_NAMESPACE="${{ env.STACK_NAMESPACE }}" | |
| if [ -n "${{ secrets.STACK_NAMESPACE }}" ]; then STACK_NAMESPACE="${{ secrets.STACK_NAMESPACE }}"; fi | |
| echo STACK_NAMESPACE=${STACK_NAMESPACE} | |
| echo "STACK_NAMESPACE=${STACK_NAMESPACE}" >> $GITHUB_OUTPUT | |
| # What image tag are we using? 'latest' (if not tagged) or a GitHub tag? | |
| TAG="latest" | |
| if [[ "${{ github.ref }}" =~ ^refs/tags/ ]]; then TAG="${{ env.GITHUB_REF_SLUG }}"; fi | |
| echo tag=${TAG} | |
| echo "tag=${TAG}" >> $GITHUB_OUTPUT | |
| # Do we push, i.e. is DOCKERHUB_USERNAME defined? | |
| echo push=${{ env.DOCKERHUB_USERNAME != '' }} | |
| echo "push=${{ env.DOCKERHUB_USERNAME != '' }}" >> $GITHUB_OUTPUT | |
| # Do we trigger downstream, i.e. is TRIGGER_DOWNSTREAM 'yes'? | |
| echo trigger=${{ env.TRIGGER_DOWNSTREAM == 'yes' }} | |
| echo "trigger=${{ env.TRIGGER_DOWNSTREAM == 'yes' }}" >> $GITHUB_OUTPUT | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Lint Dockerfile | |
| uses: hadolint/[email protected] | |
| with: | |
| dockerfile: Dockerfile | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Run pre-commit (all files) | |
| run: | | |
| pip install --requirement build-requirements.txt | |
| pre-commit run --all-files | |
| - name: Docker build | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| tags: ${{ steps.vars.outputs.BE_NAMESPACE }}/fragalysis-backend:${{ steps.vars.outputs.tag }} | |
| - name: Test (docker compose) | |
| uses: hoverkraft-tech/[email protected] | |
| with: | |
| compose-file: ./docker-compose.test.yml | |
| up-flags: --build --exit-code-from tests --abort-on-container-exit | |
| env: | |
| BE_NAMESPACE: ${{ steps.vars.outputs.BE_NAMESPACE }} | |
| BE_IMAGE_TAG: ${{ steps.vars.outputs.tag }} | |
| - name: Login to DockerHub | |
| if: steps.vars.outputs.push == 'true' | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Push | |
| if: steps.vars.outputs.push == 'true' | |
| run: docker push ${{ steps.vars.outputs.BE_NAMESPACE }}/fragalysis-backend:${{ steps.vars.outputs.tag }} | |
| # Trigger the stack build for every non-scheduled (staging) build. | |
| - name: Trigger stack | |
| if: | | |
| steps.vars.outputs.trigger == 'true' && | |
| github.event_name != 'schedule' | |
| uses: informaticsmatters/trigger-ci-action@v1 | |
| with: | |
| ci-owner: ${{ steps.vars.outputs.STACK_GITHUB_NAMESPACE }} | |
| ci-repository: fragalysis-stack | |
| ci-name: build main | |
| ci-ref: refs/heads/${{ steps.vars.outputs.STACK_BRANCH }} | |
| ci-inputs: >- | |
| be_namespace=${{ steps.vars.outputs.BE_NAMESPACE }} | |
| be_image_tag=${{ steps.vars.outputs.TAG }} | |
| fe_namespace=${{ steps.vars.outputs.FE_NAMESPACE }} | |
| fe_image_tag=${{ steps.vars.outputs.FE_IMAGE_TAG }} | |
| stack_namespace=${{ steps.vars.outputs.STACK_NAMESPACE }} | |
| ci-user: ${{ secrets.STACK_USER }} | |
| ci-user-token: ${{ secrets.STACK_USER_TOKEN }} |