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added new runtime attributes to all tasks #74

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merged 9 commits into from
Dec 1, 2022

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@Layth17 Layth17 commented Oct 29, 2022

sed -i'' -e 's/runtime {/runtime {\n <attribute_name>:<value>/g' *.wdl
4 white spaces between /n and <

  • preemptible
  • maxRetries
  • bqsr.wdl case and similar ones ... (seems to already have a preemptible parameter associated with an input value)
  • vep.wdl

@Layth17 Layth17 changed the title added preemptible and maxRetries to all tasks added new runtime attributes to all tasks Oct 29, 2022
@Layth17 Layth17 linked an issue Oct 29, 2022 that may be closed by this pull request
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+1, looks good to me with preemptible and maxRetries

@Layth17 Layth17 merged commit 56795c1 into wustl-oncology:main Dec 1, 2022
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Move specification of preemptible and maxRetries into runtime blocks of each task
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