Variant Parameter Cleanup (from PR#110)#136

Merged

malachig merged 10 commits intowustl-oncology:mainfrom tmooney:pr110

Nov 14, 2023

+157-119

Commits on Aug 24, 2023

make use of var frequency variables more consistent

malachig
authored and
tmooney
committed
make use of var frequency variables more consistent

malachig
authored and
tmooney
committed
fix min var freq variables for tumor only variant calling wdls

malachig
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tmooney
committed
the cutoff used for varscan tool and fp_filter of varscan results should be the same

malachig
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tmooney
committed
pass llr settings in from immuno and drop defaults being set everywhere

malachig
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tmooney
committed
remove incorrect input

malachig
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tmooney
committed
remove incorrect input

malachig
authored and
tmooney
committed
make parameters optional now that defaults are not being specified

malachig
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tmooney
committed
fix missing default on input

malachig
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tmooney
committed
fix another missing default on inputs

malachig
authored and
tmooney
committed