upgrading haplotype caller version and increasing mutect2 mem

wustl-oncology · Jan 17, 2024 · b0ccecc · b0ccecc
1 parent 23239c4
commit b0ccecc
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/definitions/tools/docm_gatk_haplotype_caller.wdl b/definitions/tools/docm_gatk_haplotype_caller.wdl
@@ -27,7 +27,7 @@ task docmGatkHaplotypeCaller {
     preemptible: 1
     maxRetries: 2
     memory: "9GB"
-    docker: "broadinstitute/gatk:4.1.2.0"
+    docker: "broadinstitute/gatk:4.1.3.0"
     disks: "local-disk ~{space_needed_gb} HDD"
   }
 

diff --git a/definitions/tools/mutect.wdl b/definitions/tools/mutect.wdl
@@ -29,7 +29,7 @@ task mutect {
     preemptible: 1
     maxRetries: 2
     docker: "broadinstitute/gatk:4.2.3.0"
-    memory: "2GB"
+    memory: "8GB"
     bootDiskSizeGb: space_needed_gb
     disks: "local-disk ~{space_needed_gb} HDD"
   }