Merge pull request #156 from wustl-oncology/fix_strelka_typo

malachig · web-flow · commit 76f030823127 · 2024-09-04T13:53:39.000-05:00
fix typo in naming of samples in vcf in strelka variant detection
diff --git a/definitions/detect_variants_nonhuman.wdl b/definitions/detect_variants_nonhuman.wdl
@@ -93,7 +93,7 @@ workflow detectVariantsNonhuman {
     exome_mode=strelka_exome_mode,
     cpu_reserved=strelka_cpu_reserved,
     normal_sample_name=normal_sample_name,
-    tumor_sample_name=normal_sample_name,
+    tumor_sample_name=tumor_sample_name,
     fp_min_var_freq=fp_min_var_freq
   }
 

Original file line number	Diff line number	Diff line change
`@@ -93,7 +93,7 @@ workflow detectVariantsNonhuman {`
`93`	`93`	`exome_mode=strelka_exome_mode,`
`94`	`94`	`cpu_reserved=strelka_cpu_reserved,`
`95`	`95`	`normal_sample_name=normal_sample_name,`
`96`		`- tumor_sample_name=normal_sample_name,`
	`96`	`+ tumor_sample_name=tumor_sample_name,`
`97`	`97`	`fp_min_var_freq=fp_min_var_freq`
`98`	`98`	`}`
`99`	`99`